Populus trichocarpa (black cottonwood): 7476845
Help
Entry
7476845 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7476845
KO
K01190
beta-galactosidase [EC:
3.2.1.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00052
Galactose metabolism
pop00511
Other glycan degradation
pop00600
Sphingolipid metabolism
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
7476845
09103 Lipid metabolism
00600 Sphingolipid metabolism
7476845
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
7476845
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
7476845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_2_C
Bgal_small_N
Glyco_hydro_2_N
LacZ_4
Glyco_hydro_2
Glyco_hydro_72
Motif
Other DBs
NCBI-GeneID:
7476845
NCBI-ProteinID:
XP_002299206
LinkDB
All DBs
Position
1:2078683..2087567
Genome browser
AA seq
1110 aa
AA seq
DB search
MTSLVAQVVSPVETGHKVWQDQSFIKWRKRDPHVTLHFHESVEGSLRYWYQRNKVDHLVS
NSAVWNDDAVQGALDCAAFWVKDLPFVQSLSGLWKFFLAPDPTSVPNKFYGTAFEDSEWE
TLPVPSNWEMHGYDRPIYTNVIYPFPVDPPHVPDDNPTGCYRTYFDIPEEWQGRRILLHF
EAVDSAFCAWINGVPVGYSQDSRLPAEFEITDYCHPCGSGKKNVLAVQVFRWSDGSYLED
QDHWWLSGVHRDVLLLSKPQVFIADYFFKSNLAENFTCADIQVEVKIESSLAIPKEKILA
NFTIEAALYDTGSWYDSEESANLLSSNVANLKLTHSPMGLLGFLGNVLEGKLEMPKLWSA
EQPNLYILVLSLKDATGQVVDCESCLVGIRQVSKAPKQLLVNGHPVILRGVNRHEHHPRV
GKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHHRWYELCDLFGMYMIDEANIETHGFYLC
EHLKHPTQEQSWAAAMMDRVISMVERDKNHACIISWSLGNEASYGPNHSAAAGWIREKDT
SRLVHYEGGGSRTTSTDIVCPMYMRVWDIVKIAKDPAESRPLILCEYSHAMGNSNGNIHE
YWEAINSTFGLQGGFIWDWVDQGLLKDSGDGTKHWAYGGDFGDTPNDLNFCLNGLTWPDR
TPHPALHEVKYVYQPIKVSLEESRIKITSTHFFQTTQGLEFSWATQGDGYEIGSGILSLP
PIEPQSSYELEWESGPWYPLLASSFAEEIFLTITTTLLHSTRWVEAGHVVSSSQVQLPTT
RKILPHVIKTTDAKVLIETRGDIVRVSLPSFWEITWNIQTGSVESWKVGGVPVMNKGIFP
CFWRAPTDNDKGGEKKSYYSRWKEARIHSIVYHTKSCSVKSTANDIVKIEVVYVGAPSCE
EGSSSHSNALFTVNMIYTIYSSGDLIIECNVIPSSELPPLPRVGVELHLEKSVDQIKWYG
RGPFECYPDRKAAAHVGVYEQNASDMHVPYIVPGECSGRADVRWVTFQNKDGVGIFASTY
GSSPPMQMSASYYSTAELDQATHNEELAQGNDIEVHLDHKHMGVGGDDSWSPCVHDNYLV
PAVPYSYSIRLCPITAATSGLEIYKSQLPN
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgacatctttggtagcacaagtggtgtctccggtggaaactggacataaagtttggcaa
gatcagtcttttattaagtggagaaagagagatcctcatgtcactttgcacttccatgaa
tctgttgaaggatctcttagatactggtatcaacgcaacaaagtggatcatttggtatct
aattctgctgtttggaatgatgatgccgttcaaggagctcttgattgtgcagccttctgg
gttaaggatttgcctttcgttcaatctttgtctggcttatggaaatttttcttggctcca
gaccctacaagtgttcctaataaattttatggcactgcatttgaggactcagagtgggaa
actttacctgtcccttcaaattgggagatgcatggatatgatcggcctatttataccaat
gtaatatatccatttccagttgatcctcctcatgtccctgatgataatcctactggctgc
tacagaacatactttgatattcctgaagaatggcaaggtcgaaggattttactgcatttt
gaagctgttgattcagcattctgtgcttggataaacggggttcctgtgggatatagtcag
gatagtaggctacctgctgagtttgaaattacagattactgtcatccatgtggttctggc
aagaagaatgttctagctgttcaagtctttagatggagtgatgggtcttaccttgaagat
caagaccattggtggttgtcgggtgttcacagagatgtgctgcttctttccaagcctcag
gtattcattgcagactactttttcaaatcaaacctggctgagaattttacttgtgcagat
atacaggtggaagtgaaaatagaaagctctctagcaattcctaaagaaaaaattcttgca
aacttcaccatagaagctgcattatatgacactggaagctggtacgacagtgaagaatct
gctaatctgctttcatccaacgtggctaatttaaagctcactcattcccctatgggactt
ctaggatttttgggtaatgttcttgaagggaaactcgaaatgcccaagctttggtctgca
gagcagccaaacctgtacattcttgttctctccctcaaagatgcaactggacaagtagtt
gactgtgaatcatgcctagtgggcataagacaagtatcaaaggctcccaaacagctactt
gttaatgggcatccagttatattaagaggtgtgaacaggcatgaacatcatccacgtgta
gggaagacaaatatagagtcttgtatgattaaggatctggttctaatgaagcaaaacaat
atgaatgctgtgaggaacagtcattatccccagcaccatcgttggtacgagttgtgcgat
ctttttggcatgtacatgatagatgaagccaacattgagacacatggtttttatctttgt
gaacatctgaagcatcctactcaggagcaaagttgggctgctgcaatgatggatcgagtg
ataagcatggtcgagagggacaaaaatcatgcatgcataatttcttggtccttaggaaac
gaggcctcatatggaccaaatcattctgctgcagctggttggatccgtgaaaaggacacc
tcacggctggtgcactatgaaggaggtggatccagaacaacatccactgatattgtgtgc
ccgatgtatatgcgtgtttgggacatagtgaagattgcaaaagatcctgctgaatcacgt
cctttgatattgtgcgagtattcacatgcaatggggaatagtaatgggaatatacatgag
tattgggaggcaatcaatagcacattcggtctacaaggaggctttatctgggactgggtt
gaccaggggttattgaaggacagtggagacggtaccaaacactgggcttatggaggtgac
tttggggatacacctaatgatctgaacttttgtttgaatggccttacatggccggatcgt
actcctcatcctgcattgcatgaagttaagtatgtttatcagccaatcaaggtttcccta
gaggaaagcagaataaagataaccagcacccatttctttcaaacaacacaaggtttagag
tttagctgggccacccagggtgatggatatgaaattggatctggaattctctctcttcca
ccgatagaacctcagagcagttatgagttagaatgggagtcaggtccttggtatcctctt
ttggcttcgtcttttgcagaagaaatatttttaacaataactactacacttctgcattcc
acacgctgggttgaagctggtcatgttgtttcatcgtcacaagtccagttgcctaccaca
agaaagatcttacctcatgttatcaaaactactgatgctaaagtcttaattgaaactcgt
ggagatatagttagagtcagcctgccaagcttttgggagataacatggaacattcaaaca
ggaagtgttgagagctggaaggttggaggagttcctgttatgaataaaggcatattccca
tgcttctggagagcaccaacagataatgacaaaggtggagaaaaaaaaagttattactcc
aggtggaaagaagctcgtattcatagcattgtatatcacacaaaaagttgttctgtgaag
agcacagccaatgatattgtgaaaatagaggttgtttatgtcggtgccccaagttgtgag
gagggctcatcttcacattcaaatgctttattcacagttaatatgatctacacaatttat
agttctggggacttgattattgaatgcaatgtaattccaagttctgagcttccacctctg
cctcgagtgggagttgaattgcacttggagaaatcagtggatcagattaaatggtatgga
agagggccatttgaatgttatccagatagaaaagcagcagcccatgttggggtctatgag
cagaatgccagtgacatgcatgttccttatattgttcctggagaatgttccggtagagca
gatgttaggtgggtgacgtttcagaacaaggatggagtaggaatctttgcttcaacttat
ggcagctccccacctatgcaaatgagtgctagttactattccacagcagaacttgaccaa
gcgacacacaatgaagaacttgctcaaggaaatgacattgaggtgcatcttgaccacaaa
catatgggagtaggtggagatgatagttggtcaccatgcgtccatgacaactatcttgtt
ccagctgtgccgtactcctattctatcaggttgtgtcctattactgcagctacatctggc
cttgagatatacaaatcccagcttccgaactaa
DBGET
integrated database retrieval system
