Populus trichocarpa (black cottonwood): 7484065
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Entry
7484065 CDS
T01077
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
7484065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7484065
Enzymes [BR:
pop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
7484065
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
7484065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
7484065
NCBI-ProteinID:
XP_024446048
LinkDB
All DBs
Position
18:complement(14730883..14742507)
Genome browser
AA seq
1319 aa
AA seq
DB search
MASSSSSSSTAHTKFSILVSLFNWISKTKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILP
NLDRERGTYGLKESVLAVSLIEALGMSRDSPDALKLINWRKGGANATGANAGNFSLVAAE
VLQRRQGTVSGGLTIEELNGLLDKLASSENRGEKTAVLAALINKTNTQEMKWIIMIILKD
LKLGMSEKSVFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMR
VSDAHAAWKKLHGKEVVVECKFDGDRIQIHKNGAEVHYFSRNFLDHSEYAHGMSDIIVQN
VLDERCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSV
IHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGEPYCSLIAYNVDDIEKFFKET
IENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQ
FLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPPSFYQV
TNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLD
VQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKG
ETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAK
LHGDIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIK
QLLSNINASEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRL
KLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQW
LEDSLERGQKLLEDTYNLKPSGLEESNCKEVVCDLDMEEATPILDGAENERLPSVTDSEA
KEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIGAGQARRTRARIVNKPAKISV
EKSDESCSHDDKNEENDTSDGDDEIHGGKPAGGITKKRKMGAGLARRTRACIVNKPAKIS
EEKPDESCSHDDKNEENEMSEGNYEIHGGRPAGGSTKKGKIGAGQALRTRTRIANKPAKI
LEEKSEESCLHDDEIEENEMSEGNEEIHGPVSKYNLDIQQTKTVEDSESSRRDKAKEETA
EENRHEEWLDKAPDVEMSERYYDQVTEKPEKLEVMVDPVHAILMDMIPSLGIKKGETTNP
TIDNEKQAEGPYAQSSLSMKKAENTTPTLDTEKPAENPSLLSVKKKVSYKDLAAKLLMN
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcttcctcttcgtcgtcaactgcgcacacgaaattctccatcttagtgagt
ctcttcaactggatttcaaagaccaaaacttcctccagaaaacgctctaaattccgcaaa
ttcatcgacactttctgctctccgtccgattacttctccgccgtccgcttgatcctacct
aacctcgaccgcgaacgcggcacttatggtctcaaagaatctgtcctcgccgtttccctc
attgaagcactcggcatgtccagggattcccctgatgccttgaagttgattaattggcgt
aaaggtggcgccaacgctaccggtgctaatgccggcaatttctctctcgttgctgccgaa
gtgttgcagcggaggcagggaacggtgtcgggtgggttgacgattgaggagctgaatggt
ttgcttgataaattggcatccagtgaaaataggggtgagaaaactgcagtacttgctgct
ttgataaacaagacaaatacacaggaaatgaagtggattattatgattattcttaaagat
ttgaagttggggatgagtgaaaagagtgtatttcatgaatttcacccggatgcggaagac
ttgtttaatgttacatgtgacttgaaattggtttgtgaaaagctgagggatcgaaatcaa
aggcataaacgtcaggatattgaagttggaaaagcagtgcgccctcaactagcaatgaga
gttagtgatgcacatgctgcatggaaaaagttgcatgggaaggaagtggtggtggaatgt
aaatttgatggtgatcgcatccaaatacataagaatggtgcggaagtacactatttctca
aggaactttctagatcactctgaatatgctcatggaatgtcggacattattgtacaaaat
gttttggatgagaggtgtattcttgatggtgaaatgctggtctgggatacatctttgaat
cggtttgcagagtttggttcaaatcaagaaatagcaaaggctgcaagggatgggcttgat
agtgatagacagttatgctatgttgcatttgatattctttatgttggagatacaagtgtg
attcaccaaaccttgaaggaaaggcatgagctgctccgtaaagttgtcaagccagtgaag
ggtcgtttagagatcttagtacctaatgggggtcttaatgctcatcgtcttcctggggaa
ccttattgttcgcttattgcatataacgtggatgacattgagaagttttttaaggaaacc
attgaaaacagggatgaaggtattgtattaaaagaccttggttccaaatgggaaccaagt
gatcggagtggaaagtggttgaaactgaagcctgagtacattcgtgctggttctgactta
gatgttcttatcatagggggatactatggttctggacgtcgtggaggagaggtggctcaa
ttcttgttgggtctagcagagcgtcctgcttctaatacatatcccaggcgatttatctcc
ttttgcagagtgggcaatgggctgtcagatgaggagctggatactgttgtctccaaacta
aagccttattttaggaagaatgaatacccaaagaactcaccaccaagtttttatcaagtt
acaaataattcaaaagagagaccagatgtgtggattgaaaaccctgacaaatcaattata
ctttccattaccagtgatattcggactataagttctgaggtgttttctgccccatacagc
ttgagatttccgcgtattgacagagtgagatatgacaagccttggcatgaatgtcttgat
gtgcagtcatttgtagagctagtacattcaagtaatggtaccacacaaaaaggaaaaggg
tacggatatgtgcaagatagcaaaccgacacacataaaatcctctaggaaaggagagaaa
aagagtgtgtctgttgttccatctcatttaattcagactgatatttctgacatcaagggg
gaaactttgatattttcaaatatgatgttttactttgtcaatgtgcctccatctaattct
ctcgaatccttgcacaaaatggttgctgagaatgggggaactttctcaatgaatttaaat
aactcagtcacccattgtatagctgctgaaagcaaagggattaaatatcaagcagcaaag
cttcacggagatattattcattattcatgggtcttggattgctgtttgcaaaagaagctc
cttccattgcagccaaagtccttccttttcctctctgatggttcaaagaagaagttacac
gaagaaattgatgaattttctgattcttactactgggaccttgatctttcagacatcaaa
cagcttttgagcaacataaatgcatcagaagatgccaaagccatagacgacttaaagcaa
aagtactgtccagaggaaaaatggtctctgtttcatggctgctgtgtatattttcacatt
tcaagagagtctttaacacccgattgggaatccttgttgggacttgcatttaggaggttg
aaacttgaaattttcatgggtggtggcaaagtcagcaataatattgctcatgccactcat
ttggtggtcctgattgtaccagcatctgatgtggattttggttcccttgtgaaaagtttc
acaactgcagagaaacattttctcctgaataagaggttgtatgtgattggatctcaatgg
ttggaggactctttggagagggggcaaaagttgctagaggatacatataacttgaaaccc
tctggtttggaagagtcaaactgcaaagaagttgtatgtgacctagatatggaagaagca
actcccattttagatggtgcagaaaatgagagattgccatcagttactgatagtgaagcc
aaggagaaaggaagcaaagcagctttaaaagattcaaataaactgggctcacttgaaaag
gagacaacaaggaaaagaggaaggcctgctggtgggagcacaaaaaaaggaaaaataggc
gctggccaagctcgaagaacacgggcacgaattgtaaacaagcctgctaaaatatccgta
gaaaaatcagacgaaagctgttctcatgatgataaaaatgaagaaaatgatacgagtgat
ggagatgatgaaattcatggagggaagcctgctggtgggataacaaagaaacgaaaaatg
ggtgctggcctagctcgaagaacacgtgcatgcatcgtaaacaagcctgctaaaatatct
gaagaaaaaccagatgaaagctgttctcatgatgataaaaatgaagaaaacgaaatgagt
gaaggaaattatgaaattcatggagggaggcctgctggtgggagcacaaagaagggaaaa
ataggtgctggccaagctctaagaacacggacacgaatagcaaacaagcctgctaaaata
cttgaagagaaatcagaagaaagctgtttgcatgatgatgaaattgaagaaaacgaaatg
agtgaaggaaatgaagaaattcatgggccagttagcaagtacaatttggatatccaacaa
actaaaacggtagaagattcagaatcatcacggagagataaagcaaaggaggagactgct
gaagagaacagacatgaagagtggttagataaagctcctgatgttgaaatgagcgaaagg
tattatgaccaggtgactgagaagcctgagaaactagaagtcatggtcgatccagttcat
gccatcttaatggacatgattccaagccttggtataaagaagggggagaccacaaatcca
acaattgacaatgaaaagcaagctgaaggtccctatgcacagtcaagcctcagtatgaag
aaggcggaaaatacaactccaaccctagataccgaaaagccagctgaaaatcccagttta
ctgtcagtgaagaagaaagtcagctacaaagatcttgctgccaaactgctcatgaattag
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