Populus trichocarpa (black cottonwood): 7486860
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Entry
7486860 CDS
T01077
Name
(RefSeq) ubiquitin C-terminal hydrolase 12 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
7486860
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7486860
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7486860
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7486860
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7486860
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7486860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
7486860
NCBI-ProteinID:
XP_024463288
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All DBs
Position
8:639323..651602
Genome browser
AA seq
1116 aa
AA seq
DB search
MTLMTPPPLNQQEDDEMLVPQTEFADGPQPMEVAQAETATAVDAQSVDDPPSARFTWTID
NFSRLNAKKLYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSATLPYGWSRYAQFSL
TVINQLHQKYSIRKDTQHQFNARESDWGFTSFMPLGELYDPGRGYLVNDTCVVEADVAVR
KVIDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDIPSGSI
PLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV
EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD
NKYHAEQHGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE
NGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKEDIK
RALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIAEHL
RIRLKKEQEEKEQKRKEKAEAHLYTIIKVARSEDLLEQIGKDVYFDLVDHDKVRSFRIQK
QITFNLFKEEVAKEFGIPVQLQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKA
NNAELKLFLEAEIGQDLRPVPPPEKTKDDILLFFKLYDPSKEELRYVGRLFVKGSGKPLE
ILTKLNEIAGFAPDQEIELYEEIKFEPNVMCEHIDKRLTFRSSQLEDGDIVCYQKPPPMG
SDEQCRYPDVPSFLEYMHNRQVVRFRSLEKSKEDEFCLELSKLHTYDDVAERVAHHLGLD
DPSKIRLTSHNCYSQQPKPQPIKFRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK
TLKVAFHHATKDEVVIHTIRLPKQSTVGDVINDLKAKVELSHPSAELRLLEVFYHKIYKI
FPHNEKIENINDQYWTLRAEEVPEEEKNLAPHDRLIHVYHFMKDTTQNQVQVQNFGEPFF
LVIHEGETLTEVKMRIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYG
AWEQYLGLEHSDNAPKRSYAANQNRHTFEKPVKIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgactctcatgactcctcctccgttaaatcaacaagaagacgacgagatgttggtccca
caaactgaatttgctgatggacctcagccaatggaagtagcacaagccgaaactgcaaca
gcagttgatgcacagtcggtggatgatccaccatctgctaggtttacatggacgattgat
aatttttcgaggctaaatgctaagaagctctactctgatgtttttgttgttggaggctac
aagtggcggatattgatttttccaaagggtaacaatgtggatcatttatccatgtatcta
gatgttgctgattcagcaactttgccatatggctggagtcgatatgcgcagtttagcttg
actgttatcaatcaacttcatcaaaagtactcaattcggaaagacacgcagcaccagttc
aatgcacgtgagagtgattggggattcacttcattcatgcctcttggggaattgtatgac
cctgggagagggtatcttgtaaatgacacgtgtgtggttgaagctgatgttgctgttcgt
aaggtcattgattactggtcacatgattcgaagaaggagaccggttatgttggtctaaag
aaccaaggagctacatgctacatgaactctctccttcagacgctgtatcatattccttat
ttcagaaaggctgtatatcatatgccaacaactgagaatgatatcccatcagggagcatt
cctctggctttgcagagtttgttttataaacttcaatacagtgacactagcgtagctaca
aaagagttgacaaagtcttttggctgggatacatatgactctttcatgcagcatgatgtc
caagaacttaatagggttctgtgtgaaaagcttgaagataaaatgaagggaactgttgtg
gagggcactatacaacagctatttgaagggcaccatatgaattatattgaatgcatcaat
gttgactataagtcgacaagaaaggagtcattttatgatcttcagcttgatgtcaaaggc
tgtcgggatgtttatgcttcttttgataagtatgtggaggtggaacgtcttgaaggtgac
aataaatatcatgctgaacaacatggattacaggatgctagaaagggtgtcctattcatt
gacttccccccagttctccaacttcaacttaaaaggttcgagtatgattttatgcgggat
acaatggtgaagataaatgatcgctatgagttccctttgcaacttgatcttgatagagag
aatgggaaatatttatcaccagaggctgaccgcagtgtccgcaatctatacacccttcac
agtgttttggttcacagtggtggtgtgcatggtggacactactatgcttatatcagacca
actctctcagatcagtggttcaaatttgatgatgagcgggtgaccaaagaggatatcaaa
agggcattagaggagcagtatggtggtgaggaagagttaccacagacaaatcctggcttc
aacaactctcccttcaagtttacaaagtactcaaatgcttatatgcttgtgtatattcgt
gaaagtgacaaggaaaaaataatctgtaatgtggacgagaaggacattgcagagcacctc
aggataagattgaagaaagaacaggaggaaaaggagcaaaagagaaaggaaaaagcggag
gcgcacttgtacaccataataaaggttgcacgcagtgaggatctacttgaacagattggc
aaggatgtatattttgatcttgtggaccatgacaaagtacgaagtttccgtatccagaaa
cagataaccttcaaccttttcaaggaagaagttgctaaagaatttggtataccagtgcaa
cttcaacgtttttggctgtgggcaaagcgacaaaatcatacataccgtccaaatcggcca
ctgactcctcaggaggaagcacagtctgttggacaattgagagaggtttctaataaggca
aataacgcggagctaaagctgtttctggaagcagaaattggacaggatttgcgacctgtt
cctccacctgagaagactaaagatgatatccttcttttctttaaactttatgatccatcg
aaggaggaactccggtatgtagggaggctgtttgtaaagggtagcggcaagccgttggag
atcctgacgaaactaaatgaaatcgctggctttgctcctgaccaggagattgaactttac
gaggaaataaagtttgaacctaatgtcatgtgcgaacacattgacaagaggctcactttt
cgttctagtcagcttgaagatggagatattgtttgctatcagaaaccccctccaatggga
agtgacgaacagtgccgctaccctgatgtgccttccttccttgagtacatgcacaatcgc
caggttgttcgttttcgatctttggagaaatcgaaagaggatgaattctgtcttgagctt
tcaaagctccacacttatgatgatgttgcggaaagagtagctcaccatcttggcttggat
gacccatccaaaattaggcttacatctcataactgttactcccagcaacctaaaccccag
cccatcaaattccgaggagtggatcatttgtctgatatgctggtgcactacaatcagaca
tctgatattctatactatgaagtattagacatccctctaccagaattgcaaggccttaaa
acattaaaagttgcttttcatcatgctactaaggatgaggtagtgattcataccattaga
ttgccaaaacagagcactgtaggtgatgtcattaatgaccttaaggcaaaggtggagctg
tctcatcctagtgctgaacttagattgcttgaggttttctatcacaagatctacaagatc
tttccacacaatgaaaaaatcgagaacattaatgatcaatactggacactacgtgcagag
gaggttcctgaagaagagaaaaaccttgctcctcacgatcgcttgattcatgtctatcat
ttcatgaaagacacaactcaaaaccaggtgcaggttcagaattttggagaaccatttttc
ctggtcattcacgagggtgagactttgactgaagtcaaaatgcgcatacagaaaaaattg
caggttcccgatgaagaattttcaaagtggaagtttgcttttttgtctctaggtcgccct
gagtaccttcaagattcagacatcgtgtccagccgttttcagagaagggatgtttatggt
gcttgggagcagtatcttggattggagcattctgacaatgctcctaaaaggtcatatgct
gctaatcagaatcgtcatacatttgagaagccggtaaaaatctacaactag
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integrated database retrieval system
