Populus trichocarpa (black cottonwood): 7488940
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Entry
7488940 CDS
T01077
Name
(RefSeq) putative ABC transporter B family member 8 isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
7488940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
7488940
04147 Exosome [BR:
pop04147
]
7488940
04090 CD molecules [BR:
pop04090
]
7488940
Enzymes [BR:
pop01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
7488940
Transporters [BR:
pop02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
7488940
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
7488940
CD molecules [BR:
pop04090
]
Proteins
7488940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
Zeta_toxin
AAA_22
AAA_21
ABC_ATPase
AAA_29
RsgA_GTPase
AAA_24
AAA_15
PRK
Motif
Other DBs
NCBI-GeneID:
7488940
NCBI-ProteinID:
XP_024446221
LinkDB
All DBs
Position
18:complement(10505601..10512273)
Genome browser
AA seq
1232 aa
AA seq
DB search
MNSPKKNERRGEERKSIANIFRYADWNDILLMLLGTVGAIGDGMSTNCLLVFASRIMNSL
GYGQTRQDNYNFMVEVQKCSLDFVYLGLAVMVMAFMEGYCWSKTSERQVLKIRYKYLEAI
LRQEVGFYDSQEATTSEIINSISNDTSLVQEVLSEKVPIFLMHASVFFSGLAFATYFSWR
LSLVAFPTLLLLIIPGMIYGKYLLYLSKKARTEYGKANSIVERALSSIKTIYSFTAEKRI
IDRYSAILDRTTKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAA
GISFILSGLSLGIALPDLKYFTEASVAATRIFKRIDRVPEIDSEDTKGRVLDKIQGQIVF
QNVSFTYPCRPDAVVLKDFNLKVEAGKTVALVGASGSGKSTAIALLQRFYDVDSGIVKID
GVDLRTLNLKWIRGQMGLVSQDHALFGTSIKENIMFGKLDATMDEIMAAAMAANAHNFIR
QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD
QASMGRTTLVVAHKLSTVRNADLIAVVDNGSIIEIGSHNDLINIQNGHYAKLAKLQRQFS
CDEQEQNPEIRFSSVTSSAARQSTGKSSPTIFASPLPVDDSPKPVHIPAPSFSRLLSLNA
PEWKQGLMGSISAITFGAVQPVYALTVGGMIAALFAPNHDEVRDRIRLYSLIFCSLSLFS
IIINLVQHYNFAYMGERLTKRIRLRMLEKILGFETAWFDEEENSSGALCLRLSAEASMVK
TLIADRVCLLVQTTSAVTIAMIMGLVVAWKLAIVMIAVQPLTILCFYTKKILLSSISTNF
VKAQNRSTQIAVEAVYNHRIVTSFASVGKVLQLFDEAQEEPRKEGRKKSWLAGIGMGSAQ
CLTFMSWALDFWFGGTLVEKGEISAGDVFKTFFILVSTGKVIAEAGSMTSDLSKGSTAVA
SVFKILDRQSLIPGSYHAGDGSSGTKLEKLGGKIEMKKIDFAYPSRPETLILRQFCLEVK
PGTSVGLVGKSGCGKSTVIGLIQRFYDVEKGSVRVDGVDIRELDIQWFRKRTALVSQEPV
LYSGSIRENIMFGKLDASENEVVEAARAANAHEFISSLKEGYETECGERGVQLSGGQKQR
IAIARAILRNPTILLLDEATSALDVQSEQVVQEALDRIMVRRTTIVVAHRLNTIKNLDSI
AFVADGKVVERGTYAQLKNKRGAFFDLASLQT
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaattctccaaagaagaatgagaggagaggagaggagaggaagtctatagccaatatc
tttagatatgcagattggaatgatatattgcttatgctgctgggtactgttggagctatt
ggagatggcatgtctacaaattgcttactggtgtttgccagccgcataatgaatagcttg
ggttatggtcagacacgacaagataattacaatttcatggttgaggtccaaaagtgcagt
ttagactttgtgtacttgggattagcggtcatggtgatggcttttatggagggttactgt
tggagtaaaacgagcgagagacaggttttgaagatccgatacaagtatttggaagctata
cttcgacaagaagttgggttctatgattcacaggaagcaactacttcagagatcatcaac
agcatatcaaacgatacttctctcgtacaagaagtactaagtgaaaaggtgcccatattt
ttgatgcacgcgtctgtattcttctcgggacttgcctttgccacatacttttcatggaga
ctgtctttagtagccttcccaactcttcttcttctaatcatccctggaatgatatacgga
aaataccttctctacttgtcaaagaaagctcggacggagtatggcaaagcaaactccatc
gtggagcgggcattaagttccatcaagactatttattcattcactgccgagaagagaatc
atcgataggtattcagcaatattggatagaacaacaaaattgggaatcaagcagggtata
gccaaaggtcttgctgttgggagtacagggctttcttttgcaatatgggctttccttgct
tggtatggaagtcatttggtcatgtacaaaggagaaagtggagggaggatctatgctgct
ggcatttccttcatattgagtggactatcccttggaattgcacttcctgatctgaagtac
ttcacagaagcttctgttgctgctacacggatattcaaaaggattgatagagttccagaa
atcgatagcgaagacacaaaaggacgtgtattagacaaaatccaaggccaaattgtattc
cagaatgtcagtttcacatacccttgtcgtccagatgccgttgttctcaaagatttcaac
ctgaaagttgaggcaggaaaaacagtagctcttgttggagcaagtgggagtggaaagtcc
acagcaattgcgttactccagcgtttctatgatgttgatagtggcattgtcaagattgat
ggtgttgatctaagaacattgaatttgaaatggataagaggacaaatgggtcttgttagt
caagaccatgctttgtttgggacttcaataaaagagaatatcatgtttgggaagcttgat
gccaccatggatgaaatcatggctgcggctatggctgcaaatgctcacaactttataagg
cagcttccagaggggtatgaaacaaaggttggtgaaagaggagcactcctatctggggga
caaaagcagcgaattgccattgctagagcaataatcaagaaccctgtgattctcctactt
gatgaagcaaccagtgctcttgactctgaatcagaaacactggtccaaaatgcacttgat
caagcctccatgggaagaactacactggttgttgcacacaagctctctacagttcgaaat
gcagacctcattgcagtcgttgacaatggtagcatcattgaaataggttcccacaatgat
ctcatcaacatacaaaatggccactatgccaaactggcaaagttacagagacaattcagc
tgtgatgagcaagaacaaaatcctgaaattcgcttttcttcagttactagtagtgctgct
aggcaaagtacaggaaaatcaagtccaaccatctttgcttcaccattgcctgttgatgat
agcccaaaaccagtgcacatccccgcgccttccttctctcggcttctttctttaaatgcc
cctgaatggaagcaaggcctgatgggaagtatttcagctataacatttggtgctgtgcaa
cctgtctatgcgttaaccgttggtggaatgattgcagctctctttgcaccaaaccatgat
gaagtgcgtgaccgaatacgtttatactctttaatattctgttctctttccttgttctcc
atcattataaaccttgtgcaacactacaattttgcatacatgggtgagaggctaaccaag
agaattcgattgagaatgctagagaagatcttgggttttgagacagcttggtttgatgaa
gaggaaaactctagcggggctttatgtctaagattgagcgctgaagcctccatggttaaa
acccttatcgcagacagagtttgtttattagttcaaaccacttctgcagttactatagca
atgataatggggctagtcgtggcttggaagcttgcaattgttatgatagcggtgcaaccc
ctcaccattctgtgtttctacacgaagaaaattttgctgtctagtatttcaacaaatttt
gtcaaggcacaaaatcgaagcactcaaattgcagtggaagcggtctataatcatagaatt
gtgacatcatttgcgagtgtgggaaaggtacttcaactttttgacgaggctcaggaggaa
ccaaggaaggagggcaggaaaaagtcgtggctagcaggaattggcatgggatctgctcag
tgcctaactttcatgtcatgggctctagacttctggtttggaggtactctagtggaaaag
ggagagatatcggcaggagatgtgttcaagacatttttcattttagtgagcaccgggaag
gttatagctgaggcagggagcatgacttcagatttatccaaaggttcaacagcagtggct
tctgtgttcaagattctggacaggcaatccctgattccaggttcttaccatgccggtgat
ggaagtagtggaaccaagttggaaaaactaggtggaaagatagagatgaagaagattgat
tttgcatatccaagccggccggagaccctaatacttcggcagttctgcttggaggtgaag
ccaggcactagcgttggactagtaggaaaaagtggatgtggaaaatcaaccgtgattggg
ttgattcaaagattctacgatgtcgagaaggggtcagtaagagtagatggagtggacata
agggaactagacatccaatggttcaggaagcgcacggctcttgttagtcaagaacccgtg
ttatattcaggaagcatccgggaaaacatcatgttcgggaagcttgatgcgtccgagaat
gaggtggtggaggctgcaagagcagcgaatgctcacgagtttatctcatcactcaaagaa
gggtatgaaactgaatgcggtgaaagaggagtgcagctatcgggagggcaaaagcaaaga
atagcaatagcaagagctatacttcgcaacccaaccatcctattactagacgaggcaaca
agcgctctcgatgtgcaatctgagcaggttgtgcaagaagcactggaccgaatcatggtt
agaaggacgacaattgtggtagctcatcggcttaacactataaagaatctagattccatt
gccttcgtcgccgatggaaaggtggtggagcgaggaacctacgctcaactaaagaacaag
agaggtgccttctttgacttggctagtcttcagacttag
DBGET
integrated database retrieval system
