KEGG   Populus trichocarpa (black cottonwood): 7489377
Entry
7489377           CDS       T01077                                 
Name
(RefSeq) protein decapping 5 isoform X1
  KO
K18749  protein LSM14
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7489377
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7489377
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 7489377
NCBI-ProteinID: XP_002315966
UniProt: B9HWN3
LinkDB
Position
10:complement(14763023..14768185)
AA seq 632 aa
MEAVENSNNTASTSRSSSTADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLKNVRSF
GTEGRKKDGPQILPSDKVYEYILFRGSDIKDLQVKSSPPVQSAPHINNDPAIIQSHYPRP
FATSTGFPSAVSGSLTDLGSHNGPGGQPAMNFQGGMPLYQPGGSLGTWGASPPPPNANGS
GLAMPMYWQGFYAPPNGLPHLHQQSLLRPPPGLAMPSSMQQPMQYPNFNTSLLTGISNLP
GPNLPVSTLPSSNLPISTLQASLPDVLPPLLPGIASSLNFTSHSAVPSTLPSTVPLMPSA
SLPSETLPSLMPDKIPSSALPTTNLGASLPVLSPLTTSSPDLNTIAPPISNKLSSIPGPT
MPYQSTAQSAPSGVLASNSLRTEIPTPIPSLVTPGQLLQSGSPIVPSTQPVQTAHKDVEV
VKVSPAPEPSVPATTEAQPPILPLPFPTRASHKPNGATFNARHGYHGRGRGRGYGSSRPL
TKFTEDFDFMAMNEKFKKDEVWGHLGKNNKSHSKDREDGDVSGEDDFQDEDEDELAKVEA
KPVYNKDDFFDTISCNARDLESQNGRTRFSEQMKLDTETFGDFSRYRGGRGGRGPPRGGR
FHGSYYGRGNGYGYVGRGRGRGRGWAGPDRAS
NT seq 1899 nt   +upstreamnt  +downstreamnt
atggaagcagtagagaacagtaacaacacagcgtcaacgtcgagatccagttcgacggcg
gactcttatgtaggtagtttgattagcctgacatcaaagagcgagatcagatacgagggt
attctttacaatatcaacactgatgagtccagtattggattgaaaaacgtgcggtcgttt
ggaacagaagggcggaaaaaggatggtccacaaatccttcccagtgataaagtttatgaa
tacatattgttccgtggaagtgacatcaaggacttacaggttaagtcttcaccaccagtt
cagtctgcaccacatataaacaatgacccagcaatcatacagtctcattatcctcgtcct
ttcgccacctccaccggttttccttcagctgttagtgggtctttaactgatcttggatcc
cataatggaccagggggacaacctgctatgaatttccaaggcgggatgcctttatatcaa
cctggagggagcttaggaacttggggagcttcacctcctcctccaaatgcaaatggtagt
ggccttgctatgccaatgtattggcaaggtttctatgcccccccaaatgggcttccacat
ttacaccaacaatctttgcttcgaccaccacctggactggcaatgccttcttccatgcag
caaccgatgcaataccccaatttcaatacttctttactcactggaatctcaaatttacct
ggtccgaacttgccagtctcaaccttgccatcttcaaacttaccgatttcaaccttgcaa
gcttctttgccagatgttctacctcctctacttcctggcatcgctagttcccttaatttc
acatcccattctgcagtgccatcaactttgccttcaactgtacccctaatgccctctgcc
tctctgccttctgaaacattacccagtttgatgcctgataagattcctagttctgcactt
cctacaaccaatttaggcgctagtttgccagtgctatctcctttgacaacttccagccca
gatttaaacaccatcgcaccaccaatctccaacaagcttagttcaattcctggcccaaca
atgccttatcaaagcactgcacaatctgcaccctctggtgttttggcatccaattctctt
cgcacagaaataccaacaccaattccttctttggtaacccctggccagctattgcagtca
ggatcaccaattgttccttctactcagcctgtgcaaacagcccataaagatgtggaggtt
gttaaagtatcaccagcaccagaaccatctgtaccagccaccacagaagctcagccgcca
atactcccattgccttttcctacacgtgctagccataagccaaatggggctacttttaat
gcccgccatggttaccatggacgcggaagaggaagaggatatgggagttcacgaccactg
acaaaattcactgaggattttgattttatggcaatgaatgagaagttcaagaaggatgaa
gtttggggccaccttggcaagaataacaaatctcattcaaaggatagagaagatggagat
gtcagtggtgaagatgattttcaagatgaagatgaggatgaactagctaaggttgaggct
aagcctgtgtataacaaggatgacttttttgataccatctcatgtaatgcgcgtgatctt
gaatcacaaaatggaaggacaagattctcggagcaaatgaaattagacacagagacattt
ggtgacttttcaaggtatcggggaggacgaggtggtcgtggtcctccacgtggtggtcgt
tttcatggatcttattatggaagggggaatgggtatggctatgttgggaggggcaggggc
aggggccggggctgggccgggcctgatcgtgcttcttag

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