Populus trichocarpa (black cottonwood): 7497605
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Entry
7497605 CDS
T01077
Name
(RefSeq) heat shock factor protein HSF30
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7497605
Transcription factors [BR:
pop03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
7497605
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Gene cluster
GFIT
Motif
Pfam:
HSF_DNA-bind
Ag332
PHD20L1_u1
TMF_DNA_bd
AC_N
Motif
Other DBs
NCBI-GeneID:
7497605
NCBI-ProteinID:
XP_002309214
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Position
6:complement(12716385..12718660)
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AA seq
510 aa
AA seq
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MVVPDGGDFFGYALAGVSSASFSATAMLPKLILDDDHSLTNAIKSEKDHKVGQESNMSPL
HDTACCGGGGGTSSPSSSSSMNTREMQKAAAVLEVEEEKRIKATAVTVKEEDDDGVDSLN
ELKGGGGGGNNKNNNGISSSSCSSVDLPKPMEGLHEAGPPPFLKKTFEMVGDPETDETVS
WGKNRDSFVVWDSHEFSKNLLPKYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFHGA
KKHLLKTIKRRSRYNKQQSGAVTGVNDSTKPRLEAELENLKDDQDVLRLEILKIRQKQQE
SQTQLSAVEERIQAAECKQLQMFIFFTKAARNPGFIQQLIQKRKQKGKVDGIEFCKKRRL
LQTHLPESFPAAVDTNQSVHFKNHAQEQLATMQTEITEILTEDVETCQMLKVFPAPMSDG
FCCPILQDHNANIMCEKSTQDMSSAYNLMSEKLLDDGSVIEDLVDEEVDVNDSKLYLELE
DLIGMPRMWGGFATELVGHTAGCVGSIPRL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggtggttccagacggtggcgattttttcggctacgctcttgccggtgtttcttctgca
tcattttctgcaacagctatgttaccaaaactcattttggatgatgatcattcattgaca
aatgcaataaaatcggagaaagatcataaagtgggtcaagagagtaatatgtccccttta
cacgacaccgcttgttgcggtggaggcggcgggacttcatctccatcatcatcatcatca
atgaatacaagagaaatgcagaaagcagcagcagtactggaggtagaggaggagaaaaga
atcaaagcaacagcagtcacggtcaaagaagaagatgatgatggtgtagatagtctcaat
gagttgaagggaggaggcggtggcggtaataataaaaataacaatgggatatcgtcgtct
tcgtgttcctctgtggatttacctaaacccatggagggtttacatgaggcaggtccacct
ccgtttctgaagaagacatttgagatggtgggggatccggaaacggatgaaacagtgtcg
tggggcaagaatcgcgatagttttgttgtttgggactctcatgaattctctaaaaatctg
cttccaaagtatttcaagcacagtaatttctccagcttcattcgccagctaaatacctac
ggctttagaaagattgatccggatagatgggagtttgcaaatgaagggtttcacggtgcc
aagaagcatttgctaaagaccatcaagagaagaagcaggtataacaaacagcagagcgga
gcagttactggcgtcaatgattcaacaaaacctcgtttggaagctgaacttgaaaatctg
aaggatgatcaggatgttttaaggttggaaatcttgaaaattagacagaagcagcaggag
tcgcaaactcaactgagtgctgttgaagaacgcattcaagctgcagagtgcaagcaattg
cagatgtttattttctttaccaaagctgccagaaatcctggatttattcaacaactaatc
cagaagagaaagcaaaaagggaaggtagatgggattgaattttgcaagaaaagacgactg
cttcaaacccatctccctgaaagctttcctgctgccgtggataccaaccaaagcgtccat
tttaaaaaccatgctcaggaacaactggccacaatgcagaccgaaattactgagatttta
actgaggatgtggagacctgccaaatgttgaaagtatttccagctccaatgagtgatggg
ttttgctgtccgatacttcaagatcataatgcaaatataatgtgcgaaaaaagtactcaa
gatatgtcctctgcttataatctaatgtcagagaagctactggatgatggttcggtgatt
gaggatttggttgatgaggaggtagatgtcaatgactcaaaactctaccttgaattagag
gatttgattgggatgccacgaatgtggggtggatttgcaaccgagttagtagggcataca
gctggttgtgttggatcaattcccagattgtaa
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