Polymorphobacter sp. PAMC 29334: KZX46_04470
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Entry
KZX46_04470 CDS
T07387
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
poq
Polymorphobacter sp. PAMC 29334
Pathway
poq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
poq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KZX46_04470 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poq03400
]
KZX46_04470 (ligD)
Enzymes [BR:
poq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KZX46_04470 (ligD)
DNA repair and recombination proteins [BR:
poq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KZX46_04470 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QYE35261
LinkDB
All DBs
Position
145712..148261
Genome browser
AA seq
849 aa
AA seq
DB search
MPTPADAIAKYNSKRDFAKTAEPAGTPGRATGNSFMVQRHAASRMHWDFRLELDGVLLSW
AVTKPPSGDPSVKRLAVRTEDHPLSYAAFEGTIPKGEYGGGTVMLWDRGTWTNEIDPREG
MAKGKLHFKLTGERMKGEWVLIRLKPEGKAENWLLGKIADEFAIGAELDFDTSVETGRTM
EAIAAGEPPVKTTTATARKKSTVIPAKAGTQGPDVSTLGPRVRGDDRKFEGDGNKPKSGK
SPTLKPPPFREPQLATLVDTPPTGNDWLHETKYDGYRALIAVGGGTAVAYSRSGLDWTAK
FGAVPTACATLPCASALIDGEIVALDAAGKPNFSTLQAALKDNGPLLYFAFDLLELDGED
LAGLPLIERKAKLATLLADAPAPLHYSEHVRGGGEAMFSALCAAGYEGVVSKRADGKSRP
GRSGSWLKSKCTHRQEFVIGGWSKSENGRGFASLLLGMQEGGGLRYAGRVGTGFDDRTLE
DVAAKLAKLAADKSPFAAKLPAIAKRGANFVRPELVAEVAFAEFTADGHVRHASFLGLRG
DKTAADVVLEAPAKGSDPVAATPAPDRHGVRVTSPDRIVFPDLGMTKGALVDYYAVVADV
MLKELGGRPISLVRCPQGRAKACFFQKHDSGMFSEDVHHVDIAESDGKTEPYLFVDNPEG
LLNCVQMGTIEFHGWGSRVADIERPDRLVIDLDPDEGLDFAVVRTAAVLIRDRLKAAGLA
SFPMLTGGKGVHVVAPLVPDAEWPTVKAWAKAFAESLEAEMPDAFVANMSKAKRKGRIFV
DWLRNQRGATAVLPYSVRAREGAGVAVPITWAQLSETVAGSAFTAADPAAVLAQSKRPAE
KAKAQKLPA
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcccacccccgccgacgctatcgccaagtacaacagcaagcgcgacttcgcgaaaacc
gccgagcccgcgggcacccccgggcgcgccaccggcaacagcttcatggtccagcgccac
gcggcgtcgcgcatgcactgggactttcgtctcgaactcgacggtgtcctgctgtcatgg
gcggtgaccaagccgccgagcggcgatccgtcggtcaagcgcctcgcagtccgcaccgag
gaccacccgctgagctacgcggccttcgaagggacgatccccaagggcgaatacggcggc
ggcacggtcatgctgtgggaccgcgggacgtggaccaacgagatcgacccgcgcgagggg
atggcgaagggcaagctacacttcaagctcaccggcgagcggatgaagggcgaatgggtg
ctgatccgcctcaagcccgagggcaaggcggagaattggctgctcggcaagatcgcggat
gagtttgcgatcggggctgagctcgatttcgatacgagtgtggagaccgggcggacgatg
gaggcgattgcggcgggtgagccgcccgtgaaaacgaccaccgcgacggcccgcaaaaaa
tcgactgtcatccccgcgaaagcggggacccaaggtcccgatgtttcgacattgggtccc
cgcgttcgcggggatgacagaaagttcgaaggcgatgggaacaagccgaagtcgggcaaa
tcccctaccctcaaaccacccccttttcgcgaaccccaacttgccactctcgtcgacacg
cccccgacagggaacgactggctccacgaaaccaaatacgatggctaccgcgcgctcatc
gcggtcggcggcggcacggctgtggcctactcccgcagcgggctcgactggaccgcgaag
ttcggcgcggtgccgacggcgtgtgcgacgctgccgtgtgcgtcggcgctgatcgacggc
gagatcgtcgcgctcgatgccgctggcaagcccaacttctcgacgctccaggccgcgctc
aaggacaatggcccgctgctgtatttcgccttcgacctgctcgaactcgacggcgaggat
ctcgcaggtctgccgctcatcgagcgcaaggcgaagctcgcgaccctcctcgccgacgcc
cccgcgccgctgcattattccgagcacgtccgcggcggcggcgaggcgatgttctcggcg
ttgtgtgcggcaggctacgaaggcgtcgtgtcgaagcgcgccgacggcaagtcgcgcccc
ggtcgatcggggtcgtggctcaagtcgaaatgcacccaccgccaggagttcgtcatcggc
ggctggtcgaagtccgagaatgggcgcggcttcgcctctctgctcctcggcatgcaggaa
ggcggcgggttgcgctacgccgggcgcgtcggcaccggcttcgacgaccgcacgctcgaa
gatgttgccgcgaaactcgccaagctcgccgcagacaaatccccgttcgccgccaagctg
cccgcgatcgccaagcgcggcgcgaacttcgtccggcccgaactcgtcgccgaggtcgcc
ttcgccgaattcaccgccgacggccacgttcgccacgccagcttcctcggcctgcgcggc
gacaagacggcggcggatgtcgtgctcgaagccccggcgaagggttcggatcctgtcgcc
gccacccctgctcccgaccgccacggcgtccgcgtcaccagccccgaccgcatcgtcttc
cccgacctcggcatgaccaagggcgcgctggtcgattattacgcggtcgtcgccgacgtc
atgctcaaggagctcggcggccgcccgatcagcctcgtccgctgcccgcaggggcgcgcc
aaggcgtgtttcttccagaagcacgacagcggcatgttctccgaagacgtccaccacgtc
gacatcgccgaatccgacggcaagaccgagccctacctattcgtcgacaaccccgagggg
ctgctcaactgcgtccagatggggacgatcgagttccacggctggggcagccgcgtcgcc
gatatcgagcgccccgaccggctggtgatcgacctcgaccccgacgaggggctcgacttc
gccgtcgtccgcactgccgccgtcctgatccgcgaccggctcaaggcagcggggctggcg
agcttcccgatgctcaccggtggcaagggtgtccacgtcgtcgcgccgctcgtcccggac
gccgaatggcccacggtcaaggcgtgggcgaaggcgttcgccgaatcgctcgaggcagag
atgcccgacgccttcgtcgccaacatgagcaaggccaagcgcaagggacgaattttcgtc
gactggctgcgcaaccagcgcggcgcgaccgcggtcctgccctattcggtccgcgcgcgc
gaaggggcgggggtggcggttccgatcacctgggcgcagctcagcgaaaccgtcgccggc
agcgccttcaccgccgccgaccccgccgccgtcctcgcccagtcgaagcgcccggcggag
aaggcgaaagcgcagaagctaccagcctag
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