Pseudomonas oryzihabitans: APT59_10325
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Entry
APT59_10325 CDS
T04267
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
por
Pseudomonas oryzihabitans
Pathway
por03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
por00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
APT59_10325 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
por03400
]
APT59_10325 (ligD)
Enzymes [BR:
por01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
APT59_10325 (ligD)
DNA repair and recombination proteins [BR:
por03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
APT59_10325 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALZ84571
UniProt:
A0A0U4VN59
LinkDB
All DBs
Position
complement(2220555..2223131)
Genome browser
AA seq
858 aa
AA seq
DB search
MASSSSEYNRKRNFDITAEPRDEDSPRRRKAKGALSFVIQKHDARRLHYDFRLELDGTLK
SWAVPKGPSLDPGEKRLAVQVEDHPIAYGGFEGSIPEGQYGAGDVIVWDRGEWQADGDPA
QAYAAGKLKFELRGEKLRGHWTLVRTRLRGHSDKPQWLLIKERDDQARETAEYDITVEAP
DSVLSDKTLPRLAKGTKAKEAKASTQAASPKAPARKTTAKARKADLPATLEAQLATLVDS
PPAGDWLYEVKYDGYRLLAHIEGSAVSLFTRSGNDWTERLPDQAKALAALGLDNAWLDGE
IVVNDAHGVSSFQALQNAFETGKDSRIAYYLFDLPYLNGADLREVPVEQRRELLGKLLEN
SNESDLLRFSAAFEVPADRILASACELGLEGVIGKRLGSPYRSRRNKDWIKLKCAHRQEF
IIVGYTPPKGGRQHLGALLVALHDEQGALHYAGKVGTGFTAAMLKQLHARFQPLMVERPP
VVDPPKGAAYREVTWLKPEQLCEIAYAEMTQDRIVRQGVFHGLREDKPAQEIGLEEAAPA
REAERSGPSSSSSRKSSRTSKDATVAGVRISHPERVIDEASGATKLDVARYYEAVADWML
PHLADRPVALVRTPEGIAGEQIFQKHKQTLAIPHIRELDTALDPGHAPLMVIDSRDALIG
AAQMGSVEFHTWNATADRIDRPDRFILDLDPDPALPWSRMVEATELVLTLLDELGLQAFV
KTSGGRGLHLVVPLDRRQDWETVKGFAQAAAQHLATTLPKLFAAKMGAQNRQGRIFVDYL
RNRHGATTVSAFSLRARPHLGVSVPIARDELSTLQASDQWRLDTLMQRLEGLKDDPWAGY
AKVRQGLTRARRERLGAD
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggccagttcgtctagcgaatacaaccgcaagcgcaacttcgatatcaccgccgagccg
cgtgacgaggacagcccgcgtcggcgcaaggccaagggtgccctgagcttcgttatccag
aagcacgatgcgcgccgcctgcactatgacttccgcctggaactggacggtacgctcaag
agttgggcggtgcccaagggccccagtctggacccgggtgaaaagcgcttggcggtccag
gtggaggaccatccgatcgcctacggtggcttcgagggcagcattcccgaaggccagtac
ggcgcgggcgacgtcatcgtctgggatcgcggcgaatggcaggccgacggcgacccggcg
caagcctatgccgctggcaagctcaagttcgagctcaggggcgaaaagctccgtggccac
tggaccctggtacgcacccgcttgcggggccatagcgacaagccccagtggctgctgatc
aaggagcgtgacgatcaggcacgggaaaccgccgagtacgacatcacggtggaggcgcct
gacagcgtactgagcgacaagactctgccgcgcctggccaagggtaccaaggccaaggaa
gccaaggcttccacccaagcggcaagtcccaaggcgccagcgcgcaagaccaccgccaag
gctcggaaggccgacctgccggcgacgctggaggcccagctggcgactctggtcgacagc
ccaccggcgggagactggctgtacgaggtgaaatacgacggctatcgtctgctcgcccat
atcgagggcagcgcggtcagtctgttcacccgcagcggtaacgactggaccgagcgccta
ccggaccaggccaaggccctcgccgcccttggcctcgacaatgcctggctggacggcgag
atcgtggtcaacgacgcccatggggtctccagcttccaggcgctgcagaatgccttcgag
accggcaaggacagccgtatcgcctattacctcttcgacctgccctatctcaacggcgcg
gatttgcgcgaggtcccggtcgagcaacgccgtgagctgctgggcaaactgctagagaac
agcaacgagagcgacctgctgcgcttttccgccgccttcgaggtaccggccgatcgcatc
ctggccagcgcctgcgaactcggtctggagggcgtgatcggcaagcgcctcggcagcccc
tatcgctcccgccgcaacaaggactggatcaagctcaagtgtgcccatcgccaggaattc
atcatcgtcggctataccccacccaaagggggtcgccagcacctgggcgccctcctggta
gcgctgcatgatgagcagggagcgctgcactatgccggcaaggtcggcaccggattcacc
gcggcgatgctcaagcagctgcacgccagattccagccgctgatggtagaacggccaccg
gtggtggatccgcccaagggcgccgcctatcgcgaggtgacctggctgaagccggaacag
ctgtgcgagatcgcctatgccgagatgacccaggatcgcatcgtccgtcagggcgtcttc
cacggtttgcgcgaggacaagccagcccaggagatcggcctggaagaagcggcaccagcg
cgcgaagctgaacgatccggcccttcatcctcctctagccgaaaatcctcgcgcacgtcc
aaggatgccaccgtagctggcgtgcgtatcagccatccggagcgagtgatcgacgaggcc
agcggcgcgacgaagctagacgtcgcccgttactacgaagccgtggcggactggatgctg
ccccatctggccgatcgccccgtagcgctggtgcgtacccccgaaggcatcgccggcgag
cagatcttccagaagcacaagcagaccctggccattccccacatccgcgaactggatacg
gcgctcgatcccggtcatgcgccgttgatggtcatcgacagccgcgatgccctcatcggt
gccgcccagatgggtagcgtggaattccacacctggaacgccaccgccgaccgcatcgac
cgacccgaccgcttcatcctcgatctcgaccctgatcccgccctgccctggtcacgcatg
gtggaggcgacggagttggtgctcaccctcctcgacgagctggggctgcaggccttcgtc
aagaccagcggcggtcgcggcctgcacctggtggtccccctggatcgccggcaggactgg
gaaacggtcaagggcttcgcccaggccgcggcgcagcacctggccactaccctgcccaag
ctctttgccgccaagatgggagcgcagaatcggcagggccggatcttcgtcgactacctg
cgcaaccgccatggcgccaccacggtcagcgccttttccctgcgcgcccggccgcacctc
ggcgtttcggtacccattgcccgcgacgagctgtcgaccctccaggccagcgaccaatgg
cgcctcgataccctgatgcagcgcctcgaagggctcaaggacgacccttgggcaggatat
gcgaaggtgcgccaggggctgacccgggcgcggcgcgaacgtttgggcgcagattag
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