Porphyrobacter sp. LM 6: BG023_111620
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Entry
BG023_111620 CDS
T04468
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
porl
Porphyrobacter sp. LM 6
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
porl03016
]
BG023_111620
Enzymes [BR:
porl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BG023_111620
Transfer RNA biogenesis [BR:
porl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BG023_111620
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AOL94547
UniProt:
A0A1D7NLD1
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All DBs
Position
complement(1674283..1675506)
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AA seq
407 aa
AA seq
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MKIHELITTTEALSDLCDRLAKSEFVTVDTEFMRENTYWPELCLVQIANSEEAAAIDPMA
EGIDLTPLLDLMCNNEDVLKVFHAGGQDVEIIVNLTGKTPHPIFDTQIAMMAISQSEQIG
YANLVETWMGLTIDKGARFTDWSRRPLTDRQIEYAIGDVTHLATIFPRILKKLIKTGRGV
WLNAEMEKLADPSNYLTDPGVAWKRIRQPGRNPQVLGRMKALAAWRESEAQHKNIPRGRI
MRDETLADIASHPPKTQADLAKVRGLSPAWKDNDIGKRLMKVLAEAEPLPKDEMPDKAER
GAPLGKEGALVADLLKLLLKIRAREIDVAPRLLTRAEEMEALAAGVRNLPVLDGWRFEVF
GKDALDLVEGKLAFAVEKGRLKMTHIDDVLPPAEPEEPEQPDKLAAE
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacacgaactgatcaccaccaccgaggctctctccgacctctgcgaccgcctt
gcgaagtccgaattcgtcacggtcgacaccgaattcatgcgcgagaacacctattggccc
gaactctgcctggtgcagatcgccaatagcgaggaagccgccgcgatcgatccgatggcg
gaaggcatcgacctcaccccgctgctcgatctgatgtgcaacaacgaagacgtgctcaag
gtcttccacgccggcgggcaggacgtcgaaatcatcgtcaacctgaccggcaagactccg
cacccgatcttcgacacccagatcgcgatgatggcgatcagccagtccgaacagatcggc
tatgccaacctggtcgaaacctggatgggtctcaccatcgacaagggcgcgcgctttacc
gactggagccgccgtccgctgaccgaccgccagatcgaatatgcgatcggcgatgtcacc
cacctcgccacgatcttcccgcgcatcctgaaaaagctgatcaagaccgggcgcggcgtg
tggctcaatgccgagatggaaaagctcgccgatccgtcgaactacctcaccgatccgggc
gtggcgtggaagcgcatccgccagccgggccgcaatccgcaggtgctcggccggatgaag
gcgctcgccgcatggcgcgagagcgaggcgcagcacaagaacatcccgcgcggccgcatc
atgcgcgacgagactctggccgatatcgccagccacccgcccaagacgcaggccgatctc
gcaaaggtgcgcgggctttcgccggcgtggaaggacaatgacattggcaagcgcctgatg
aaggtgctggccgaggccgaacccctgcccaaggacgaaatgccggacaaggcggagcgc
ggcgcgccgctgggcaaggaaggcgcgctggttgccgatctgctcaagctgctgctcaag
atccgagcgcgcgaaatcgacgtcgccccgcgcctgctgacccgcgccgaggaaatggaa
gcgctggccgccggggtccgcaaccttccggtgcttgatggctggcggttcgaggtgttc
ggcaaggacgcgctcgatctggtcgaaggcaagctcgccttcgcggtcgagaaggggcgg
ctcaaaatgactcacatcgacgatgtgctgcccccggctgaaccggaagaaccggaacag
cccgacaagctggcggctgaatga
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