Pseudomonas oryziphila: EJA05_09145
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Entry
EJA05_09145 CDS
T07791
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJA05_09145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pory03400
]
EJA05_09145
Enzymes [BR:
pory01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJA05_09145
DNA repair and recombination proteins [BR:
pory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJA05_09145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AZL67896
UniProt:
A0A3Q8TZF7
LinkDB
All DBs
Position
complement(1929345..1932794)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKHTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELDHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQKIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKQPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMHKDEVTRFKARFRERFDVDFR
RSAIFQDLTSGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEERRGDLSRPLLPPAELFMPVEDCFAKLKQWPRVVVSTDDLEPGAGRERFPARALPNL
AIEAKANQPLAALSNFLEQFPGRVLFTAESAGRREVLLELLERLKLRPQTVEGWADFITG
SERLAITIAPLDDGLLLDDPAIALVAESPLFGQRVMQRRRRDKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDSQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQNAIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQISADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGNQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPSKNLMRLTLLKLQAEKLGIKKV
DAGPNGGKLEFEAQTPVDPLTLIKLIQGQPKRYKFEGATQFRFMVPMERPEERFNTLEAL
FERLTPQPN
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacacacctggggcaac
ctgcccggtgccgccttgagcctggccatcgccgaagccgccagcagtgccggccgcttc
accttgctgctgaccgccgacagccaggccgccgatcgcctggagcaggagctgcgcttc
tttgccccggacctgccggtactgcccttccccgactgggaaacgctgccctacgacctg
ttctcgccgcaccaggacatcatctcgcagcgcatcgccagcctgtaccggctgccggag
ctggaccacggcatcctggtggtgcccgtgaccaccgccctgcaccgcctggcccccacc
cgcttcttgctgggcagcagcctggtgctggacgtgggccagaagatcgacgtcgagcag
atgcgcacgcgcctcgaggccagcggctaccgctgcgtcgacacggtttacgagcatggc
gagttcgccgtgcgcggggcgctgatcgacctgttccccatgggcagcaaacagccgtac
cggatcgacctgttcgacgacgagatcgagacgctgcgcaccttcgacccggagacccag
cgctcgatcgacaaggtcgactcggtgcgcctgctgccggcccgcgaattccccatgcac
aaggacgaggtgacccgcttcaaggcccgcttccgtgagcgcttcgatgtggacttccga
cgcagcgcgatcttccaggacctgaccagcggcatcatcccggccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccggcggacactcag
gtgttctccctgccgggcgtggagcaggctgccgagcacttctggaacgacgtgcgcggg
cgctacgaagagcgccgcggcgacctcagccgcccactgctgccgccggccgagctgttc
atgccggtcgaggactgcttcgccaagctcaagcagtggccccgggtggtggtcagcacc
gatgacctcgagcccggcgccggtcgtgagcgcttcccggcgcgcgcgctgcccaacctg
gccatcgaggccaaggccaaccagccgctggcggcgctgtcgaacttcctcgagcagttc
ccgggccgcgtgctgttcaccgccgagtccgccggccggcgcgaagtgctgctggaactg
ctcgaacgcctgaagctgcgcccgcagaccgtcgagggctgggccgacttcatcaccggc
agcgaacgcctggcaatcaccatcgccccgctcgacgacggcttgctgctggacgacccg
gccattgccctggtggccgagagccccttgttcggccagcgcgtgatgcagcgccggcgc
cgcgacaaacgcggcgaggcggccaacgacgcggtgatcaagaaccttaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggccacg
ctggaaatcgacagccaggccgccgagttcctcacccttgaatacgccgaaggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggtagcgacgatgcc
ctggcgccgctgcaccggctgggttcggaagcctggcagaaggccaagcgcaaggccgcc
gagcaggtgcgcgacgtcgccgccgaactgctcgacatctatgcccgccgcgccgcgcgc
aaaggctacgcattcgccgacccggccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaactcccgaccagcagaacgccatcgaggccgtgcgcgaggacatgctcgcc
gccaaacccatggaccgcctggtatgcggcgatgtcggcttcggcaagaccgaggtggcc
atgcgcgcggcgttcatcgccgtgcacagcggccgccaggtggcggtgctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggta
acggtcgaggtgatgagccgcttcaagtcggccaaggaggtcagcgccgctgccgcggag
ctcgccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgtg
cgcttcaaggacctgggcctggccatcatcgacgaggaacaccgtttcggcgtgcgccag
aaggaacagctcaaggccctgcgcagcgaggtggacattctcaccctcaccgccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagcgctgctgcgtgaactgctgcgtggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgcggagctggccgagctggtcccggaggcacgcatc
ggcatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgtttcaacgtactgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agtgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcgcagttgcaccag
ctgcgcggccgggttggccgcagccaccaccaggcctacgcctatctgctgacgccgccg
cgccagcagatcagcgccgatgccgaaaaacgcctggaagccatcgccaacacccaggac
ctgggtgccggcttcgtcctagccaccaacgacctggagatccgcggcgccggcgagctg
ctgggcgacggccagagcgggcagatccaggcggtcggtttcactctgtacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggcaaccagccgaacctcgagcaaccgctt
ggcggcggcccggagatcaacctgcgcctgccggcgttgatccccgaggactacctgccg
gatgtacatgcgcgcctgatcctttacaaacgcattgcatcagcggcggacgaggaaggc
ctcaaggacctgcaggtcgagatgatcgaccgcttcggcctgctgcccgagccgagcaag
aacctgatgcgcctgaccctgctcaagctgcaggcggaaaagctcggcatcaagaaagtc
gatgccggccccaatggcggcaagctcgagttcgaggcgcaaaccccggtcgacccgctg
accctgatcaaactgatccagggccagcccaaacgctacaagttcgaaggtgcaacccag
ttccgcttcatggtgccgatggaacgccccgaagaacgcttcaatacactggaggcgctg
ttcgagcgcctgaccccacagccaaactaa
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