KEGG   Pseudomonas oryziphila: EJA05_15145
Entry
EJA05_15145       CDS       T07791                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pory  Pseudomonas oryziphila
Pathway
pory03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pory00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EJA05_15145 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pory03400]
    EJA05_15145 (ligD)
Enzymes [BR:pory01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EJA05_15145 (ligD)
DNA repair and recombination proteins [BR:pory03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EJA05_15145 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AZL68986
UniProt: A0A3S8UL11
LinkDB
Position
3256246..3258714
AA seq 822 aa
MAKPLQEYQRKRDFDATPEPAGQRARPRPAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGRIPEGHYGAGDVIVWDRGVWQPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRAHLAGKKEQWMLVKSHDGQARSETDYSIVEAMPDSVL
SERTLPPRRPAKASTSTRKPKAGRKALPNVLQPQLATLVDSPPSGDWHYEVKFDGYRILA
RIDGDDVRLFTRNGHDWSTKMPRQIEALRALGLDAAWLDGEMVVVGDNGAADFQALQNAF
DTEHDERITYYLFDLPWLGSEDLRDLPLQARRATLAKLLEGNASPLLRYSADFKESVDSL
LDSACRLELEGLIGKRADSPYGCRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLL
ALHDHDSGQLRYAGKVGTGFSAATLDSILARLKPLQTAKPPLPNPPTGAETRAVHWLKPQ
LLAEVAYAQMTREGIVRHAVFHGLRDDKPATAIDLEQAMPAKRAAQTKPEALGTLRLTHS
DRVVDATTGATKRQVAQYYAQVADWLLPQLKDRPVALVRAPDGLAGELFFQKNPGQLHIP
HVLSYSKAQAGQTAMVLNRADSLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMA
GLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELSQLK
GANQWHIGNLQARLAEVDDPWAEMARTRQSITVRMRKQLGID
NT seq 2469 nt   +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcgacgccacacccgagcca
gcgggccaacgcgcccgcccccgcccggcccatgcgctgcagtactgcatccagaagcac
gacgccagccacctgcactacgacttccgcctggagctcgacggcaccctcaagagctgg
gcgatccccaaggggccctccctcgaccccaaggtccggcgcttggcggtgcatgtggag
gatcacccgctggactacgccgatttcgaaggacgcatccccgaagggcactacggcgcg
ggcgacgtgattgtctgggaccgaggtgtctggcaacccgaaggcgacccgcgcgaagcc
tatgccaagggcaagctgcgctttcgcctgcagggcgagaagctgtcgggggtgtggaat
ctgttccgcgcccacctggccggcaagaaagaacagtggatgctggtcaagtcccatgac
gggcaggcgcgcagcgaaaccgactacagcatcgtcgaagccatgccagacagcgtactg
agcgagcgcaccctgccgccgcggcgccccgccaaggcgagcacctctacacgcaagccc
aaggccggccgcaaagccctgccgaacgtgctgcagccgcaactggctaccttggtcgat
tccccacccagcggcgactggcactatgaagtcaagttcgatggctaccggattctggcg
cgcatcgacggtgacgacgtacgcctgttcacccgcaatggccacgactggagcaccaag
atgccccgtcagatcgaggcactccgcgccctggggctcgacgcagcatggctggacggc
gagatggtagtggtcggcgacaacggtgcggccgacttccaggccctgcagaacgcattc
gacaccgagcacgacgaacgcatcacctattacctgttcgacttgccctggctgggaagc
gaagacctgcgcgacttaccgctacaggcgcgacgcgccaccctggccaagctgctggaa
ggcaatgcttcgccgctgctgaggtattccgccgatttcaaggaatctgtcgactcgctg
ctcgacagcgcttgccggctggaactcgaggggctgattggcaagcgtgccgacagccct
tatgggtgtcggcgcagcagtgactggatcaaactcaagtgcaagcagcgccaggagttc
gtgatcgtcggctacaccgaccccaagggcagccgccacggcttcggcgccctgctgctg
gccctgcacgatcacgacagcggccagttgcgctacgccggcaaggtcggcaccggcttc
agcgccgccaccctggacagcatcctcgcccggctgaaaccgctgcagaccgccaaacca
cccctgcccaaccctcccactggcgccgaaacccgcgccgtgcattggctcaagccacag
ctgctggccgaagtcgcctatgcccagatgacccgcgaaggcatcgtgcgtcacgcggtg
ttccacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcaggccatgccc
gccaagcgcgcagcacaaactaaacccgaggctctgggtaccctgcgcctgacccactcc
gaccgcgtggtcgacgcaaccaccggcgccaccaagcgccaggtcgcacagtactacgcc
caggtcgccgactggctgctgccacagctgaaggatcggcctgtagccctggttcgggca
ccggatggcctggccggcgagctgttcttccagaaaaaccccggccagctgcatatcccc
cacgtgctcagctacagcaaggcccaggccggccagacggccatggtgctcaaccgcgcc
gacagcctgttgggcgcggtgcagatgaacacgctggaactgcacacctggaatgccacc
accaaggacttcgacaagcccgaccgcttcgtcctcgacctggaccctgatcccgcgctg
ccctggaaagccatgctggaggccacccagctgacccttaccctgctcgatgagctgggc
cttaaggtctttctcaagaccagcggcggcaagggcatgcacctcgtcgtgccactgacc
cggcgcgcggggtgggacgaggtgaaggacttcagccatgccctggtcgaacacatggcc
gggctgttccccgatcgcctcagcgcggtgtccggcccgaagaaccggatcggacggata
ttcatcgactacctgcgcaacggcaagggtgccaccaccgtcgccgcctactcgctgcgg
gcccgcgagggcctgccggtatcggtgccgatctggcgcgaagagctgagccagctcaag
ggcgccaaccaatggcacatcggcaacctgcaggcacggcttgccgaggtggacgatccg
tgggccgaaatggccaggactcgtcagtcgattaccgtacgtatgcgcaagcaactgggg
atcgactga

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