Pseudomonas oryziphila: EJA05_22190
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Entry
EJA05_22190 CDS
T07791
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03410
Base excision repair
pory03430
Mismatch repair
pory03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EJA05_22190 (recJ)
03430 Mismatch repair
EJA05_22190 (recJ)
03440 Homologous recombination
EJA05_22190 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pory03400
]
EJA05_22190 (recJ)
DNA repair and recombination proteins [BR:
pory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EJA05_22190 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EJA05_22190 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJA05_22190 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AZL70265
UniProt:
A0A3S8UPF3
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All DBs
Position
complement(4731134..4732843)
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AA seq
569 aa
AA seq
DB search
MRIEPRPLPSTLPFLGNLPPLLTRLYAARGVQSEAELDKGLARLLPYQQLKGIEAAVDLL
VEALDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRQPQLLITVDNGISSVEGVAAAKVAGLRVLVTDHHLPGQQLPDADAIVNPNQPGCAF
PSKSLAGVGVIFYVLMALRARLRSLGRYDSQPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCDDAALALDMAQQLDGLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVAGFHIRDALDAVAARHPALISKFGG
HAMAAGLSLPAENFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLARALRNA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEAR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaaccccgccccctgccgtcgaccctgccattcctgggcaacctgccgccc
ttgctgacccgcctgtacgccgcccgtggcgtgcagtccgaagccgaactggacaaaggc
ctggcccggctgctgccgtaccagcagctcaagggcatcgaggcggcggtggacctgctg
gtcgaagccctcgatcagcgccagcgcatcctcatcgttggcgactttgacgccgacgga
gccaccgccagcaccgtcggtgtgctggggctgcgcctgctgggcgctgcgcatgtcgat
tacctggtgcccaaccggttcgaatacggctacggcctgacccccgagatcgtcgaagtg
gcgttgcagcgccagccgcagctgctgattaccgtggataacggcatctccagcgtcgaa
ggcgtggcagcggccaaggtggccgggctcagggtgctggtcaccgaccaccacctgccg
ggccagcagttgcccgatgctgatgccatcgtcaacccgaaccagccaggctgcgcgttc
ccgagcaagtcgctggcgggcgtgggggtgatcttctacgtgctgatggccctgcgtgcg
cgcttgcgcagcctcggccgctacgacagccagccgcagccgaatatcggtgaactgctc
gacctggtcgcgctgggcagcgtcgccgacgtggtgccgctggatgccaacaaccgcatc
ctggtgcaccagggccttgagcgcatccgcgctggccgcgcccgccccgggctcaaggcg
atcctcgaggtggcccgccgcgaccatcggcgcatcacctccaccgacctgggtttcatc
ctcggcccacggctcaacgccgccgggcgcctggacgacatgagcctgggcatcgaatgc
ctgctgtgcgatgacgcagcgctggcattggacatggcccagcaactggatggcctgaac
caggaccgcaagtccatcgagcagggcatgcagcgcgaagccctggcgcagctcaaggac
ctgccggtcgaatcgatgccctatggcctgtgcctgttcgatgccgattggcaccaaggg
gtgatcggtattctggcctcacgcctgaaggagcgttaccaccgaccgaccatcgctttt
gccgacgcgggcgagggcatgctcaagggctcggcgcgttcggtggcggggttccatatc
cgtgatgcgctggatgcggtggcggcgcggcacccggcgttgatcagcaagttcggtggg
catgccatggcggcgggattgtcgttgccggctgagaacttcccggcgtttgccgaggcc
ttcgatgaagaggtgcggcggcaactgcgggaggaggatctgaccgggcggttgttgtcc
gatggcagcttggcggtcgaggagtttcacctggacttggcgcgggctctgcgtaatgcc
gggccctgggggcagcactttcctgagccgttgttccatggggtgtttcagttggtcgag
cagcgggttgtcggtgagcggcacctgaaggtggtgctcaagagcgagtgtggttcggtg
cggttggatgggattgcctttgggattgatcgggaggtttggccgaatcctacggtgcgg
tgggtggagttggcttacaagttggatgtgaatgagtttcgtgggaatgagagtgtgcag
ttgatgattgctcacatggaagcgcggtga
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