Polaromonas sp. SP1: DT070_17835
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Entry
DT070_17835 CDS
T05689
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pos
Polaromonas sp. SP1
Pathway
pos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DT070_17835 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pos03400
]
DT070_17835 (ligD)
Enzymes [BR:
pos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DT070_17835 (ligD)
DNA repair and recombination proteins [BR:
pos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DT070_17835 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYQ29709
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Position
3754257..3756881
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AA seq
874 aa
AA seq
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MAARDLLKDYRAKRDFKRTPEPAHGGARADKALTFVIQKHDARNLHYDFRLELQGTLKSW
AVPKGPSLDPSVKRMGVHVEDHPLSYAAFEGSIPAKQYGAGDVIVWDRGLWTPLGDPVKG
LKSGKLKFELHGEKLKGGWTLVRMHGRGGDRQEPWLLIKEHDEHARSEKEFDVLKALPDS
VLSGNPLPGKTGKTGKTPAKKTQSKESRVKAPAKKAADDIPEGATKAKLPETLAPQLATL
VTRPPADPEGWVYEIKYDGYRMLARIEGRSVKLFTRNGNDWTTKLPKLAKAVAALDLPSG
WIDGEIVVMNEQGVPDFGALQNAFDRASTANILYYVFDLPFFDGLDLRELPLTQRREVLC
TLVTRHPQGSIRFSDAFDQAPQDLLDSARRVGLEGVIGKRADSAYVSRRSPNWIKLKTQL
RQEFVIGGYTAPKGSRTGLGALMLGVHDEHGKLQYAGNVGTGFNDKTLDSLTARLQKLHA
DRSPFAKLPAGVKGQWVKPRLLAEVAFGEWTHGGLIRHSVFQGLRTDKPATHIIREKPAA
LAAGKGAAMPLAKKTPAAKPAAKTAAKPVPAALKSLRVTHADRVIDASTGLTKQDVVEHY
AGVAALMLPHLKARPTSLVRAPSGIAGELFFQKHAEATSIPGIKLLDPKLDPGHAPLLEI
PSVTALLSATQVNVIEFHTWNATTRSIDKPDRMTFDLDPGEGVGWPQVQEAAQLVRAFLD
ELGLASFLKTSGGKGLHVVVPLKRQYDFDTVKDFSHAVVMHLAAVIPQRFVAKSGPKNRV
GKIFADYLRNGFGATTVAAWSLRARPGMGVSVPVAWDELPSLTGGAHWTAQTLGARLAVG
NQPWDAYEASRNSLGSAMKRLGFKPPRAGTTRKA
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccgcgacctgctgaaagactaccgggccaagcgcgacttcaagcgcacaccc
gaacctgcgcacggcggcgcgcgcgcggacaaggccctcacctttgtcatccagaagcac
gacgcgcgcaacctgcactacgacttccgcctcgagctgcaaggcacgcttaaaagctgg
gccgttcccaaggggcccagcctggaccccagcgtcaaacgcatgggtgtgcacgtggaa
gaccacccgctttcttacgccgcctttgaaggcagcatcccggccaaacagtacggcgcg
ggtgatgtgatcgtctgggaccgcggattgtggacaccgctgggcgacccggtgaaaggc
ctcaaaagcggcaagctcaagtttgagctgcatggcgaaaagctcaaaggcggctggacg
ctggtgcgcatgcacggccgcggcggcgacaggcaggagccctggctgctgatcaaggag
catgacgaacatgcgcgcagcgaaaaagagtttgatgtgctcaaggcgctgcccgacagc
gtgctatcgggcaatcctctacctggcaaaaccggaaaaaccggcaagacaccggctaaa
aagacacagagcaaagagtcacgggtcaaggcgcctgccaaaaaagccgccgatgacatt
ccggaaggcgccaccaaagccaaactgcccgaaacgctggcgccgcaactggccacactg
gtcacccgcccgcccgccgaccccgaaggctgggtctatgaaatcaagtacgacggttac
cggatgctggcgcgcattgaaggccgctcggtgaagctctttacccgcaacggcaatgac
tggacgacgaagctgccgaaactggccaaggcggtggccgcgctggacttgccttccggc
tggatagacggcgagattgtggtgatgaacgagcagggtgtcccggacttcggtgcgctg
caaaacgcctttgaccgcgccagcaccgccaacattctttactacgtgttcgacctgccc
ttctttgacggcctggacctgcgcgagctgccgctcacccagcggcgcgaagtgctgtgc
acgctggtcacccgccatccgcagggcagcatccgcttcagcgacgcgtttgaccaggcg
ccgcaagacctgctcgactccgcccgccgcgtcgggctggagggcgtgatcggcaagcgc
gccgactctgcctacgtatcgcgccgctcacccaactggatcaagctcaagacgcagctg
cgccaggaatttgtgattggcggctacacggcgcccaagggctcacgcaccggcctgggc
gcgctgatgctgggcgtgcacgacgagcacggcaagctgcagtacgccggcaatgtcggc
accggctttaacgacaagacgctggacagcctgacggcccggctgcaaaagcttcatgcc
gatcgcagcccgtttgcaaagctgcccgccggcgtcaaaggccaatgggtcaagccgcgt
ttgctcgccgaggtggccttcggggaatggacccacggcgggctgatccgccactccgtg
ttccagggcttgcgcaccgacaaacccgccacacacatcattcgggagaaacccgccgcg
cttgccgccgggaaaggagccgccatgcctctcgccaaaaagacccctgccgccaaaccg
gccgcaaagacggccgccaaacccgttcctgcggcgctgaaatccttgcgcgtgacacac
gccgaccgcgtgatcgatgccagcaccggcctgaccaaacaggacgtggtcgagcactat
gccggcgttgcggcgctcatgctgccgcacctcaaggccaggccgacctcgctggtgcgc
gcgccgtcgggcatcgcgggcgagttgttcttccagaagcatgccgaggccacctccatc
ccgggcatcaagctgctggacccgaaactcgacccgggccatgcaccgctgctggagatt
ccctccgtcaccgccctgctctcggccacccaggtcaatgtgatcgagttccacacctgg
aacgccaccacccgttccatcgacaagcccgaccgcatgacctttgacctggacccgggc
gaaggcgtgggctggccgcaggtgcaggaggccgcgcagctggtgcgcgccttcctggac
gagctggggctggccagcttcctgaagaccagcggcggcaagggcctgcatgtggtggtg
ccgctcaagcgccagtacgacttcgacacggtgaaggacttttcgcatgcggtggtgatg
cacctggcggcggtgattccccagcgctttgtggccaaaagcggccccaaaaaccgcgtg
ggcaaaatttttgcggactacctgcgcaacggcttcggcgccaccacggtggcggcctgg
tcgctgcgggcccggcccggcatgggtgtgtcggtgccggtggcctgggatgagctgcct
tcgctcaccggcggcgcgcactggacggcgcagacactcggagcgcgcctggccgtcggc
aaccagccgtgggacgcctacgaagcgtcccgcaacagcctgggcagcgcgatgaagcgc
ctgggcttcaagccgccgcgcgcgggcaccacacgcaaggcgtga
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