Porphyrobacter sp. YT40: E2E27_13580
Help
Entry
E2E27_13580 CDS
T06153
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pot
Porphyrobacter sp. YT40
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pot03016
]
E2E27_13580 (rnd)
Enzymes [BR:
pot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E2E27_13580 (rnd)
Transfer RNA biogenesis [BR:
pot03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E2E27_13580 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDH35258
LinkDB
All DBs
Position
2901417..2902643
Genome browser
AA seq
408 aa
AA seq
DB search
MKIHPLITTTEALSDLCDRLAKSDFVAVDTEFMRENTYWPELCLVQIANTEEAAAIDPMA
PGIDLKPLLDLMCENEDVLKVFHAGGQDVEIIVNLTGKTPHPIFDTQIAMMAISQSEQIG
YANLVETWVGLTIDKGARFTDWSRRPLTDRQIEYAIGDVTHLSAIFPKILKKLIKTGRGL
WLNAEMEKLADPSNYLTDPGVAWKRIRQPGRNPQVLGRMKALAAWRESEAQHKNIPRGRI
MRDETLADIASHPPKAQADLAKVRGLSPAWKDNDIGKRLMKVLAEAEPLPKSEMPEKIKQ
GAPLGKEGALVADLLKLLLKIRAREIDVAPRLLTRADEMEALAAGVRKLPVLEGWRYEVF
GKDALDLVEGKLAFAVEKGRLKMTHIDDVVAPEAAPEPEAEPDPLAAE
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccatccgctgattaccaccaccgaggccctctccgacctctgcgaccgtctc
gcgaagtccgatttcgtcgcggtcgataccgaattcatgcgcgagaacacctattggccc
gaactctgcctggtgcagatcgccaatacggaagaagccgccgcgatcgacccgatggcg
ccggggatcgacctcaagccgttgctcgacctgatgtgcgagaacgaggacgtgctcaag
gtcttccacgccggcgggcaggatgtcgagatcatcgtcaacctcaccggcaagaccccg
cacccgatcttcgacacccagatcgcgatgatggcgatcagccagtccgaacagatcggc
tatgccaacctcgtggaaacgtgggtcgggctcaccatcgacaagggcgcgcgctttacc
gactggagccgccgcccgctgaccgaccggcagatcgaatatgccatcggtgacgtcacg
catctatcggcgatctttcccaagatcctgaaaaagctgatcaagaccggtcgcgggctg
tggctcaatgcggagatggaaaagctcgccgatccgtccaactaccttaccgatcccggc
gttgcgtggaagcgcatccgccagccgggccgcaatccgcaggtgctcgggcggatgaag
gcgctcgctgcctggcgcgagagcgaggcgcagcacaagaatatcccgcgcgggcgcatc
atgcgcgacgagacgctggccgacatcgcgagccatccgcccaaggcgcaggccgatctc
gccaaggtgcgcggtctcagtcccgcgtggaaggacaatgacatcggcaagcgcctgatg
aaggtgctggccgaggcggaacccctgcccaagtcggaaatgcccgagaagatcaagcag
ggcgcgccgctgggcaaggaaggcgcgctggtggccgatctgctcaagctgctgctgaag
atccgcgcccgcgagatcgacgtcgccccgcgtctgctcacccgcgccgacgagatggaa
gcgctcgcggcgggggtgcgcaagctccccgtgctcgaaggctggcgctacgaggtgttc
ggcaaggacgcgctcgatctggtcgaaggcaagctcgccttcgcggtcgagaaggggcga
ttgaagatgacccacatcgacgatgtggtcgcaccggaggctgcgcccgaacccgaagcc
gaacccgatccgctggcagcggaatag
DBGET
integrated database retrieval system
