Penicillium oxalicum: POX_d05310
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Entry
POX_d05310 CDS
T09521
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pou
Penicillium oxalicum
Pathway
pou03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
POX_d05310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pou03400
]
POX_d05310
Enzymes [BR:
pou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
POX_d05310
DNA repair and recombination proteins [BR:
pou03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
POX_d05310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
LIG3_BRCT
DNA_ligase_IV
RTT107_BRCT_5
BRCT_3
Motif
Other DBs
NCBI-GeneID:
74437563
NCBI-ProteinID:
XP_049969109
LinkDB
All DBs
Position
IV:complement(1532291..1535730)
Genome browser
AA seq
1014 aa
AA seq
DB search
MDSDEIVPDHTQIELEDLDEKYPNRPHNRGQTLPFHELYLNLFDPLSEIRKRPKGPSLAR
RKAGPNGKSATTLNPYEIRRDIIARFISKWRKEVGDDIYPAFRLILPDKDRDRPMYGIKE
KVIGKMLVKIMKINRESEDASSLLNWKLPGVTAARMAGDFAGRCYDVLSKRPMRTEPGDM
SIEEVNKKLDDLSVATKEDQQIHILSDFYRRMNPEELTWLIRIILRQMKVGATERTLFHV
WHPDAENLYSISSSLRRVCWELHDPNIRLQAEDRGIGLMQCFQPQLAQFQMHSFEKMISR
MRPTEDDPVFWIEEKMDGERMQLHMAADDSVPGGRRFRFWSRKAKEYTYLYGSGIHDEKG
ALTRHMGHAFAEGVQSLILDGEMITWDPKQDAPVPFGTLKTAALAEQRNPFSDGPRPLFR
VFDILYLNGTDLTKYTLRDRRKALEKVVNPIPRRFEILEYYEATTVADIEKRLRSVVAEA
SEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLIVIGGYYGSGHRGGNLASFLC
GLRVDDQHASQGADPMKCWSFCKVGGGFTAADYQEIRHHTDGKWHEWDLKKPPTALIELA
GGDAQHERPDTWIRPSDSVVLCVKAASVSVSDQFRLGLTLRFPRFKKLRKDKNWESALSI
QEFLDLKSNVEQEHREREFAVDNSRKQKRVKRAVKKPLTIAGYEEEEEARYFGPSGHIFD
HLNFFVMTESITPEKKTKAELEQLIKANGGRIFQTHTAAQDTICIADRRTVKVVSVQKSG
QANIVRPSWLIDCIRQNEKDAGLPDLLLPFEPRHMFFMLEDHVEDIKLNVDRFMDSYARD
LTVDELKEIMDQRVLFGHQAQESFDRQSAARIEAQIQRKVDSGYAPLRGWLFCNLKFFFP
TRQENRASDRGKNNAHPLGGVDDIRVTLARNTALFGGAQILNSLEVGAVTHVLIHTTQMP
PASIMALRQSIALGSTSKIPHLVSLDWLEESWKHGTLLDEEMPWKDSLYHASLK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggactcagacgagattgtccctgatcatacgcaaatcgagctggaggacctggatgag
aaatatccgaatcgcccccacaaccgtggtcaaacgctgccctttcatgagttgtacctc
aatctttttgacccactcagtgagatcagaaagagacccaagggcccaagtctagctcga
agaaaagctggaccaaacggaaagagtgcaacgactctcaatccttatgaaatcaggcga
gacattatcgcccgtttcatttccaaatggcggaaagaagttggagatgacatctatcct
gcatttcggttgattcttcctgataaggacagagacagaccgatgtatggcatcaaagag
aaagtcattggcaagatgcttgtcaagatcatgaagatcaacagggagtctgaggacgct
tcgagtctgctcaattggaagcttccgggggtcacagccgcccgaatggcgggggatttt
gctgggcgctgctatgatgttctgtccaagcgaccaatgcgcacggaaccgggcgacatg
tccatcgaggaagtgaacaagaagctagatgatctttctgtcgcaacaaaagaagatcaa
cagattcatatcctgtcagacttctatcggcgcatgaatccggaggagttgacatggctg
attcgcatcattcttcgccaaatgaaggtcggtgccacagaacgcaccctgttccatgtt
tggcatccggacgccgagaatctatacagtatttcaagcagcttacgccgagtctgctgg
gagctgcatgacccgaatatccgacttcaagcggaagatcgtgggatcgggctgatgcag
tgctttcagcctcagctggcgcaatttcaaatgcactcgtttgaaaagatgatctcgcga
atgcgcccgactgaagatgacccagtattctggatagaagaaaagatggatggggagcgc
atgcaacttcacatggctgccgatgactctgtgcctggtgggcgcaggtttcgcttttgg
tcacgcaaggctaaggaatacacatatctctacggaagtggtattcatgacgaaaagggc
gccttgacgaggcatatggggcatgctttcgcagaaggcgtgcagagcctgattctagat
ggtgagatgatcacatgggatccaaagcaagacgctccggttccctttggtacattgaag
accgctgctctggcagaacaacgcaaccctttctccgatggacctcgaccgctgttccgc
gtatttgatatcctctatctcaacggtaccgacctcaccaaatatacgcttcgcgaccgt
cgtaaagctctggagaaggtagtcaaccccattcctcgtcgcttcgaaatcttggaatat
tacgaggcgacaaccgtcgccgatatcgaaaaacgcctacgaagcgtcgttgctgaagcc
tcagagggcctggtgctgaagaacccgcggtcgccataccggctgaatgagcgccatgat
gactggatgaaagtcaaaccagaatatatgactgaatttggcgagtctctcgatctcatc
gtcattggcgggtactacgggtccggtcatcgaggcggtaaccttgcaagttttctctgt
ggtcttcgtgttgacgaccaacatgcctcgcaaggagcagacccgatgaaatgctggtca
ttctgcaaagtcggagggggattcactgctgcagattatcaagaaatccgccaccatact
gatggcaagtggcatgagtgggatctcaaaaagccaccgacagcattgattgaacttgcc
ggaggagatgctcagcatgagcggccagacacttggatcaggccatcagactctgtggtt
ctgtgcgtgaaagcagcctcggtgtccgtgagtgaccagtttcgtctggggttgacgctg
cgctttccacgtttcaaaaagttgcggaaggataagaactgggaaagcgctctatctatt
caagaattcttagacctcaaatcgaatgtcgagcaggaacaccgcgagagagaattcgca
gtcgacaactctcgcaagcaaaagcgtgtgaagagagcggtcaagaaacctttgaccatt
gctgggtatgaggaagaagaggaagctcgatattttggcccttcgggtcatatcttcgat
catctcaacttcttcgtcatgacggagtcgataacgccagagaaaaagaccaaggccgag
ctggagcaattgatcaaagcgaatggaggcagaatatttcaaactcacacagctgcgcaa
gacaccatctgtatagctgaccgcaggaccgtcaaggtcgtatcggtacaaaaaagcggg
caggctaatatcgttcggccatcatggttgattgattgcattcgccagaatgagaaagat
gccggtctaccagatcttctcctgccgtttgaacccagacacatgtttttcatgttggag
gaccatgtagaggatatcaagctaaatgtcgaccggtttatggacagctatgcgcgagac
cttacagttgatgagctcaaagagataatggatcagagggtcctctttgggcatcaggca
caagaatcctttgatcgtcaatccgctgcaaggatcgaggctcaaattcaacggaaagtc
gactctggttatgcgcctctgcgtggatggctattttgcaacctgaaattttttttcccg
acgagacaagagaatcgagcatctgacagaggcaagaataacgcgcaccctcttggtggt
gttgatgatattcgtgtgactctcgcgcgcaacacagctctctttggcggggcacaaatt
ctcaattcgttggaagtaggcgcggtcacccatgttctgatccataccacacagatgccc
cccgccagcatcatggcattgcgacaatccatagccctggggtcaacttcgaagattccc
catctggtcagcctggattggctggaagagagttggaagcacggtaccttattggatgaa
gagatgccttggaaggattctctgtatcacgctagtctgaaatag
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