Paralichthys olivaceus (Japanese flounder): 109626272
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Entry
109626272 CDS
T06037
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109626272 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109626272 (skiv2l2)
03041 Spliceosome [BR:
pov03041
]
109626272 (skiv2l2)
03009 Ribosome biogenesis [BR:
pov03009
]
109626272 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
pov03016
]
109626272 (skiv2l2)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109626272 (skiv2l2)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109626272 (skiv2l2)
Spliceosome [BR:
pov03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109626272 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
109626272 (skiv2l2)
Ribosome biogenesis [BR:
pov03009
]
Eukaryotic type
Pre-60S particles
Helicases
109626272 (skiv2l2)
Transfer RNA biogenesis [BR:
pov03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109626272 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
109626272
NCBI-ProteinID:
XP_019937605
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTSSSKTPPASVALDPGKSGGKNGTDKDAGSAVPVKREADSDG
GEEVVFVKKPRNEAASANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKGRVG
KAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMNEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSSSGGKWDPRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSP
TVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEEQYHGIDIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVIVNFCKKSNVKTITDSEPLYVVEVLVHCSKESVKDAATEAAKPAAAGETGEM
LVIPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRDLKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEIKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEIDEETYLNQFKPHL
MDVIFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagacggcctgttcagcgtgtttgacgatgaacaacaaaccagt
tccagcaaaactcctcccgcctccgtggctctggatccagggaaatcaggaggtaaaaat
ggcaccgacaaggatgctggatccgctgtcccggtcaagagggaggcggacagtgacggt
ggagaggaggtggtattcgtgaagaaacctcgaaacgaggcagcctctgctaatgacctg
aatcttgcagagtttatgcctcaagtgaaggtggagcaagttgaaactgtggaaggatgc
tcacatgaggtggctctgcctgccagtgatgaatataaaccactgaaaggtcgagtgggg
aaagcagccaaggagtacccttttattcttgacccgttccagcgcgaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcacacacctccgctggcaagactgtctgt
gctgaatatgctatagctctggccctcagagagaagcagagagtgatcttcaccagcccc
atcaaggctctttctaaccagaaatacagagagatgaatgaggagtttcaggacgtggga
ctgatgactggtgacgtcaccatcaaccccacagcctcctgccttgtcatgacaacagag
attctgaggagcatgttgtaccgaggctcagagatcatgagggaagtggggtgggtcgtc
tttgatgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagaccatc
atccttcttcctgacaatgtgcattatgtgttcttgtcggccaccatccccaatgccaga
cagttcgctgagtggatttgtcacctacataagcagccatgccatgtggtgtatacagac
tatcgtcccactccactgcaacattacatctttccagcagggggtgacggtctccacctg
gtggttgatgagaatggagacttcagagaggacaacttcaacacagctatgcaagtgctg
agagacgcaggggattctggaagcagcagcggaggcaagtgggacccgagaggacgaaaa
ggaggcactaaaggtccatccagtgttttcaagatagtgaagatgatcatggagaggaac
ttccagcccgtcatcattttcagcttcagcaagaaagagtgtgaggcgtacgctctgcag
gtggccaaactggactttaatagagatgatgagaaacgtctggtggaggaagtgttcaac
aacgctgtggactgtctctcagacgaagacaagaaactgcctcaggtggagcatgtgctg
cctctgttaaagaggggaataggtatccatcatggaggcctgctgcccatcctaaaagaa
accatagagatccttttctccgaaggtctgatcaaggccctgtttgccacagagacgttt
gccatgggcatcaacatgccagctcgcaccgtgctcttcaccagtgcacgcaagtttgat
ggcaagaatcatcgctttatcacatcaggtgagtacatccagatgtctgggcgtgcaggg
aggagaggaatggacgacaggggaattgttattttcatggcggatgagaagatgagtccg
actgtgggcaaacagctgctcaagggatcagccgacccattgaacagcgccttccacctg
acctacaacatggtgcttaacctgctgcgtgtggaggagatcaacccagagtacatgctg
gagaagtctttctaccagtttcaacactacagggctttgcctggtgtagtggagaaaata
aagaagttggaggagcagtaccacggcattgatatccctaatgaggagagcgtggtcact
tactttaaaatccgacagcagctcgcaaaactggggaaagagatacaagagttcatccac
aaacctaaatactgccttcccttcctgcagcctggacgacttgtcaaggtaaaaaatgaa
gatgctgactttgggtggggagttattgtaaacttttgcaagaagtctaacgtgaagacc
attacagactccgagccgctgtatgtggtggaggttttggttcactgcagcaaggaaagt
gtaaaagatgctgcgaccgaggctgcaaaacctgctgctgcgggggagactggagagatg
ctcgtgatcccagtgatgctgcatctcctgacttccatcagctctgttcgtctttacatc
cccaaagacctgaggcccttcgacaacagacagctcatgctcaagtctattcaggaggtg
cagaagcgtttcccagatggcgttcctctgctcgaccccatagacgacatgggcattaaa
gaccctgctctgaagaaagtcattcagaaagtggaggcctttgagcaccgcatgtactct
caccccctgcacagtgacccaaatctggaatctgtgtattctctctgtgagaagaaagcg
ctgattgcagcagatgttcgcacagccaagcgagacctgaagaaagctcgcaccgtcctg
cagatggacaagctgaagtgcaggaagagagtcctgcgacgcctcggcttcgccagtccc
tccgatgtgatcgagatcaaagggagagttgcatgtgaaatcagcagtgctgacgagctg
ctgctgacggagatggtgttcaacggtctcttcaacgatctgacggtggaacaggccacc
gcccttctgtcctgcttcgtcttccaggagaacgccagtgagatgcccaaactgactgaa
cagttagccgcacccctgagacagatgcaggagtgtgcgaagcggatagccaaggtgtcg
gcagatgctaagctggagatagacgaggagacttatctgaaccagtttaaacctcacctg
atggatgtgatcttcgcgtgggccaatggcgccacgttcgctcaaatctgcaaaatgacc
gacgtctttgaagggagcatcatccgctgcatgcgtcgtctggaggaggtgctgagacag
atgtgctctgcagccaaggccattggcaacactgagctggagaacaagtttgctgaagga
ataacaaagatcaagagggacattgtttttgctgccagtctctacctataa
DBGET
integrated database retrieval system
