Paralichthys olivaceus (Japanese flounder): 109637947
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Entry
109637947 CDS
T06037
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03013
Nucleocytoplasmic transport
pov03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109637947 (upf3a)
03015 mRNA surveillance pathway
109637947 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109637947 (upf3a)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109637947 (upf3a)
mRNA cycle factors
P-body specific factors
109637947 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
109637947
NCBI-ProteinID:
XP_019956184
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MRSEKDQMTAGKDKSVVEIQFRDIPRDQENIAGGNRQKEEKREVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRIKDKSDTGETDRAKWEKAGGQMKSK
DPKEKGQPESDKEQREQQHGRRQRDKDHRGKDDERKRQRHHYEFDKFMRRKDETKWGKGY
CQDRAKKEGHHHGFSYCPDGVDKLGKEDREELGNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSGCKGYDCIPVGPSPEPGSDHCFEVVTVAPGLEKGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagatgacggcgggcaaggacaagagcgtggtggagattcag
ttcagggacatcccgagggaccaggagaacattgccgggggcaaccgacagaaggaggag
aagagggaggtgttcacgaaggtggtgattcgaaggctcccaccgaacctgtcaaaagat
caactagaagaacagctcagtccgctgccgtcctacgactattttgagttcttcccagct
gatcaaagtctctatcctcatctgttctccagagcatatatcaatttcaaaaaccctgaa
gatatcttgctgttcagagaccgatttgacggctatgtcttcatcgacaacaaaggccag
gagtatcctgcggttgtagagtttgcccccttccagaagatttccaagaagaaactgaaa
aagaaagatgctaaagctggaagcattgaagaagatccagaatacaagcggttcttggag
aattactcctgcgatgaggagaagtctatggccaaccctgagactctgctgggggagata
gaggccaagaccagagagctcatagccaagcggacgacacctctactagagtacatcaag
aataagaaaattgagaaacagagaataagagaggagaagagagaggagagaaggaggaga
gagctcgaaaagaaacggcaaagggaggaggagaagagaaagcggcgagaggaggagaga
cgtaaacgaaaagaggccgagaagcagaagaaattgtctgataaagacataaaaatcaag
ctcctgaagaagagtgacagagacgacgatgtggattcagacagaatcaaagacaagagt
gacaccggggagacggacagggcaaaatgggagaaagctggaggacaaatgaagtcaaag
gaccccaaagaaaaaggtcagcctgagagcgacaaggagcagagagagcagcagcacgga
cgccggcagcgagacaaggaccatcgagggaaagatgatgagaggaaacgacagcggcat
cactacgagtttgacaaatttatgcgccgcaaagatgagaccaagtgggggaagggctac
tgccaagaccgggccaagaaagaagggcaccatcatggtttctcttactgtccagatggt
gtggacaagcttggaaaggaggacagggaggagctgggtaatcggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtcccgccatgcagctctatcagccgggcgcacgcaac
cgcaagcgcatgagctctgggtgcaaaggctatgactgcatccccgtgggcccctcgccc
gaacccgggtcagatcactgcttcgaggtcgtcactgtggccccggggctggagaagggg
ttcgagaaaagcaaagatgagcagtga
DBGET
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