Paralichthys olivaceus (Japanese flounder): 109640088
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Entry
109640088 CDS
T06037
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109640088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109640088
03041 Spliceosome [BR:
pov03041
]
109640088
03036 Chromosome and associated proteins [BR:
pov03036
]
109640088
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109640088
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109640088
mRNA cycle factors
Common to processing body (P body) and stress granule
109640088
Spliceosome [BR:
pov03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109640088
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109640088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
109640088
NCBI-ProteinID:
XP_019959446
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MSHVAIENAHGLEQQLAVLDLSAADGQIGGNSSKEAKWRYIPPHLRNKDASKNAGNAFAA
GRQGVYAMAPPANFGWDGGRNNFVNGYHDNRMAGNTFNRGPPRMERGRGGGGGYRGNRGG
AFNPINPAQPMGFGCFENKGGIQHPNESFLYNAGGWNTAKDAYNSFGNNRGKSAFFNDRG
NANRGRFEHGGFGGGGGGGNSRWVEESRDEGDWSKPTPRNERLEHELFSASNTGINFEKY
DDIPVEATGQNCPHHIESFQDVDMGEIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMAC
AQTGSGKTAAFLLPILSQIYTEGPGEALNAAKASGQENGKYGRRKQYPMSLVLAPTRELA
LQIYDEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD
YCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPHKGLRQTMMFSATFPKEIQILARDFLEE
YIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALED
FLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLP
SDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQ
HKSSNRGRSKRFAGGFGARDYRQTAAGANTGGFGGRGGRNQSGHGATRGFGGGGFGNFYT
SDGYGGNYSHSQVDWWGN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccatcgagaatgcccacggcctggagcagcagctcgctgtcctcgac
ttgagtgctgcagatggacaaattggaggcaatagcagtaaggaggcaaaatggcgatac
attcctccgcatttacggaacaaagatgcttccaaaaatgcaggaaatgccttcgccgct
ggtcgacaaggtgtctacgccatggcgcctccagccaactttggttgggacggagggcgc
aacaactttgtaaatggctaccatgacaaccgcatggccggcaacacatttaaccggggc
ccgcctcgcatggagcggggaagaggcggcggaggcggttaccgtggtaacagaggagga
gccttcaaccccattaacccagcacagccaatgggatttggttgcttcgaaaacaaaggt
gggatccagcatccaaatgagagtttcctctacaatgcaggtggctggaacacagccaag
gacgcctataacagttttggtaacaaccgagggaagtctgcattcttcaatgacaggggc
aacgctaatagagggaggttcgagcatggcggatttggtggtggaggaggaggaggaaac
agccgctgggtagaggagtcccgagatgaaggggattggtccaaaccaacaccacgtaac
gaacgccttgaacatgagctgttctctgccagtaacacgggcattaactttgagaaatat
gatgacattcctgttgaggccacagggcagaactgcccccaccacattgagagtttccaa
gacgtggacatgggtgagattatcatgggtaacatcgctctgagtcgctacacaagaccg
acccctgtccagaaatatgccattccaatcgtcaagtcaaagagagatctcatggcatgc
gcacagacaggttctggaaagactgcagcattcctgctgccgattctcagccagatctac
actgagggaccaggagaagctttgaatgcagctaaagcctctggacaggagaacgggaag
tacggacgtcgtaagcagtatccaatgtctctggtactggctccaaccagagagctggct
ttgcagatatatgatgaagccaggaagttttcctacaggtccagagtgcgtccctgtgtt
gtgtacggaggagcggacattggccagcagatcagagatctggagagaggctgccaccta
ctggttgctacaccaggaagactggtagacatgatggagagaggcaagatcggactggac
tactgcaactacctggtcctggatgaagcagatcgcatgttggacatgggattcgaacca
cagatcaggcgcattgtcgagcaggacaccatgccacacaaaggcctccggcaaaccatg
atgttcagtgctacctttcctaaggagatccagatcctggccagggatttcctggaggag
tacatcttcctggccgtgggcagagtgggttccacctcagagaacatcactcagaaagtg
gtgtgggtggaagagagcgataagaggtctttcctcctggacctgctcagtgctacaggc
aaggactcgttgactctggtttttgtggagaccaagaaaggcgccgatgccttggaggac
ttcctgtatcgggagggctacgcctgcaccagtatccatggtgaccgctcccagagagac
cgcgaagaggccctcagccagttcagatcaggaaaatgccccattctggttgccacagcg
gtggcagctcgggggctggacatctccaacgtgaagcatgttattaactttgacctgccc
agcgacatagaggagtacgtccaccgcatcggacgtacaggacgagttggaaacctggga
ctggccacatcgttcttcaatgataagaacgggaacatcactaaagacctgctggacatc
ctcgtagaggccaaacaggaagttccctcttggcttgagagcttggcctatgagcaccag
cataagagcagcaacagaggacgctctaagaggttcgctggagggttcggagcacgtgac
tatcgtcagacggccgctggagcaaacaccggagggtttggcggacgcggaggtcgcaac
cagtcaggacatggagcaacccgaggctttggaggaggtggttttggaaacttctacacc
agtgacggatacggcggcaactactcgcactctcaagttgactggtggggcaactag
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