Paenibacillus sp. 32O-W: IJ21_43260
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Entry
IJ21_43260 CDS
T04219
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pow
Paenibacillus sp. 32O-W
Pathway
pow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IJ21_43260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pow03400
]
IJ21_43260
Enzymes [BR:
pow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IJ21_43260
DNA repair and recombination proteins [BR:
pow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IJ21_43260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ALS29689
UniProt:
A0A0U2UTX0
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All DBs
Position
4775660..4776556
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AA seq
298 aa
AA seq
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MRKTGSITVEGHEMTVSNPDKLLWPEAGLTKLAYLEKLVSLSPYLLRYTRGRYLTTIRFP
NGIHGKSFYQKNAPQPKPPFVRTAQEGDISYVELDSLPTLLWLGNLACLEFHASFDRIGE
PVYPTEWVLDLDPSREEEPRIMEAAALTGELLASLGIASVPKTSGATGVQIIVPLASRLS
FDELRQFGQFVGQYLATKHPSLFTIERLKKNRGTLIYVDYLQHYPGKTIAAPYTPRARVG
ATVSMPLTWEEVRSGVSPADFHLLNVERRLREKGDPLSGAAGQDLRPVLSFLKQGTKR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaagacaggctcgatcaccgtcgaaggccatgaaatgaccgtgtccaatcccgac
aagctgctatggccggaagcgggactgaccaaactggcctatttggagaagctcgtttcg
ctttctccctacctgctccgctacacgcgcggacgctatttgacgacaatccgctttccg
aacgggatccacggcaaatcgttttaccagaaaaacgcgccgcagccgaagcctccgttc
gtccgcaccgcgcaggaaggcgacatatcgtacgtcgagctggattcgctgcctacgctg
ctgtggctcggcaatctggcctgcctcgaattccatgcgtcattcgaccggatcggagaa
ccggtatacccgacggaatgggtgctggacctcgacccttcgcgcgaggaagagccccgc
attatggaagcggcggctttgaccggcgaattgctggcttcgctcggcatcgcttccgtg
ccgaagacgtcgggcgcgacaggggtacagattatcgtgccgctggcgtcgcggctctcc
ttcgacgagctgcgccagttcggccaattcgtcggacaatatctggctaccaagcatccg
tcgctcttcaccatcgaacggctgaaaaaaaatcgcggcaccttgatctatgtcgattat
ttgcagcattatcccggcaagacgatcgccgcgccttatacgccgcgcgcccgggtcggc
gcaaccgtctcgatgccgctcacgtgggaggaggtgcgaagcggcgtatcaccggccgat
ttccatctgctgaacgtcgagcgccggctgcgcgagaaaggcgacccgttgtccggcgcc
gccggacaggatttgcgcccggtgctctcctttctgaaacagggcacaaaacgataa
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