Komagataella phaffii: PAS_chr1-4_0051
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Entry
PAS_chr1-4_0051 CDS
T01092
Name
(RefSeq) RNA-dependent ATPase RNA helicase (DEIH box)
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-4_0051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-4_0051
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAS_chr1-4_0051
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PAS_chr1-4_0051
Complex C
U5 SnRNP specific factors
PAS_chr1-4_0051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
ResIII
Helicase_PWI
BRR2_plug
Helicase_C
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8197271
NCBI-ProteinID:
XP_002490163
UniProt:
C4QXA9
LinkDB
All DBs
Position
1:complement(1503280..1509723)
Genome browser
AA seq
2147 aa
AA seq
DB search
MSDQNDFKKYKYEEMSNKVTHVDRRFLNETGSHNNEISSVPETIKGRISYRDIGSKVSRE
SISEKERTQIQRGDLELSESSSFFLSSDVNEGRRLVQTTDFESLSYYPRTEQTRESYMKI
LTWTSKYFDSDISEDILRSGVDLMLEILHTDLDGKKNRCEEILDRPISKDDFYELSKLSE
QLTDYSKETEENEINNNGGVAIELDDNDGNFKENYNNELKIATDENGQQYDNLSDSDATQ
LKESSSYFTDGFVEAQIIKPERNLANNDLLIPEFHKIDQFWLRNQVAKLYPSAQSHEHTT
MTQSLIGLMKRFMQENISSRSFVSELLQLLGQSNLKFVHEMVQNSPYIYYSMQLNNASEE
DVPKILNEVSNRKLEFLVAQYNEYTQKFYSPASKKRRLESLPEKLTTDFTQREPRLIDLQ
TLVFDQGSHLMTTNKVNLPNGSFKRVKKSYEEFHIPAPEPPTMGSDERLVSISELPNWAQ
QAFPNSETLTLNRIQSKVYPIAFKEDENILLCAPTGSGKTNVALLTILRTISKFRNQDTG
TLALNKFKIVYIAPLKALVQEQVREFQRRFDSFGIKVGELTGDSNLTKHQIKSTQILVTT
PEKWDIITRKMSDISYVRLVRLLIIDEIHLLHDERGPVIESIVSRSIRNDEISGNEPVRL
VGLSATLPNFNDVATFLRVDESKGLFYFDGSYRPCPLAQQFVGILEKKALKRYQAMNQAC
LDKVIDNLQGDHQIIVFVHSRVDTAKTARYLMENLSACNKLDLLQKTDLGSKEILREESK
SFSSEDLRNLVVSGIGIHHAGLNKQDRSLVEDLFADGYVQVLVSTATLAWGVNLPAHTVI
IKGTSVYSPEKGVWSQLAPQDILQMLGRAGRPRYDKTGEGIIITVQEEVQYYLAILNQQL
PIESQLMSKIHDCLNSEIVLGTVTSRQEAVSWFSYSYLFVRMLRSPALYHVGPEYSQDKT
LLEMRLDICHSALTQLQKNGLISFDPLSGKVWPNYLGRISSYFYIDHSTISLFNKFLKPY
STDIDLLRIFSQSSEFRFIPVRLDEKLELKRILQSIPIPVKDTAENPLTKVNILLQCYIS
HLKLEGFAIVQDMIYITQSASRILRAIHEIALKKRWATVSKYSLELYKMVNKRMWLSSSP
FRQFPNVHPEIIRKSESSVLPWSYYLGLTESSEMAQAIRSEKLGLATLKLVKQFPKLTMN
ANFQPITHSLMRIEVVIYPEWEWNVSLHGFAESFLLLVEDCNGERILFCDTIVIKKQYIK
EEHIVEFTVPILEPSEPNYFITLVSENWLQCEYKIPLMLTHLKRPKKYRPPTPLEEVPLI
PVHNLNLPECRTVFDFEFFNKFQTRVFNSVFETDASALICANKGCGKTVIAELALLRLWC
SGNGRAIYVSPCDATIAKIYKIWRRKFKSVAGGKVIKVLTGELNSDLKLLSISDVILATP
AHLDQLCRRWKNRSVVQSIELVVADDCHTVGNGYNGFIYEVALSRIRIMAIQLSKPIRIV
GLSNPLARADDFGSWLGVEIDHNYNFDSKERIAPLEIEIKSSDIKENHSMILAMLKIGFQ
AISDKFGSSVVFLPDTELCFEVGQELLTLFRKRNYNGSSQKFQPPVDSKHLAGIRDVRLK
HLISQGIGILYQGIAGNDQNTIENLYELGCLKVIICSRDVVSLAPPCDFACVMGTQFYEG
REHRYIDYSISDILEMVGVSSLQALIVTNSGKLDYYTKFLSEPLPVESHLSLFLTDAFVN
EISCQVVRNRQDCIDWLTYTFFYRRLQLNPSYYGVTDVSSVGLSEYLSELVETTVNELTE
SQMIEFQEVDDDEIKDVVEIVPLTATMIASYYNVCFSTMQTFILSLSPKTKLKGMLEIVA
SAAEFDSIPVRKHEEGILNRLYDQVPIKCSTGASIESPRVKALILIQAHFSRTKLTPELH
YDQQFVLRKMLNLVYTCVDILSGEGHLNAITAMDLSQMVVQGIWKNESPLKQIPFFDNAA
LLRRCQEARVETIFDIMSMEDDERDNLLKLSNAQLQKVAEFVNKFPNVDIDYELDITEGT
IIVDEEREIIVTLTRDEQPEDLTVISSVYPYTKTENWWLVIGCSHSKELYGIKRTRISKQ
QEQVKVTFSVPSPGSHEITLWCMCDSYMDADKEVSFELRVEDNQIRI
NT seq
6444 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccaaaatgatttcaagaaatataaatacgaggaaatgtcgaataaggtgact
catgtggatcgaagattcctgaatgaaactggatcgcataacaacgaaataagttctgtc
cctgaaaccatcaaaggaagaatctcgtatcgagatattggttcgaaagtttcaagagaa
agtatttctgagaaggaaaggacccaaattcaaagaggagacttagagttgagtgaatct
tcttcgtttttcctttcttcggatgttaacgaagggcgacgtttggtacaaactacggac
tttgagtctttatcttactatccaagaacagaacagactagagagtcttatatgaaaatc
ttaacatggacgtcgaagtactttgacagtgacatttcagaagacatactgagatcgggg
gttgacttgatgcttgaaattttgcatactgatctagatggcaagaagaatagatgcgaa
gaaatcttggatcgacccatatctaaagacgatttttatgaattgtcaaaactaagtgag
cagttgactgactactccaaagaaacagaggaaaatgaaatcaataacaatggcggtgtt
gctattgaactggacgataatgatggtaactttaaagaaaattataataacgagcttaaa
attgccactgatgagaacggtcagcaatacgacaatttgagtgatagtgatgctacacag
ttgaaagagtctagttcttacttcacagatggttttgttgaagcccaaattatcaaaccc
gaaagaaatctagcaaacaacgatcttttgatcccagagtttcataaaattgaccagttt
tggttaaggaatcaagtcgccaaattatatccatctgcacagtcacacgagcatacgacg
atgacccaatcattgattggattgatgaagcgtttcatgcaggaaaatatatcatcaagg
agttttgtatcagaattacttcagctcttggggcaaagtaacttaaagtttgttcacgag
atggttcagaattctccatacatatactatagcatgcagctgaataatgcatcagaggag
gatgtgccaaagatattgaatgaggtaagtaacagaaaacttgaatttttggttgcccag
tataatgaatatactcaaaagttttacagtcctgcttctaaaaagagaagacttgaatct
ttacccgaaaaactaacaactgattttactcaaagagagcctaggctgatagatcttcag
acactggtatttgatcagggttcgcacttaatgacaacaaataaagtcaaccttcctaat
gggtcattcaaaagagtgaaaaaatcttacgaagagtttcatattcctgctcctgaacct
cccacaatgggctcagatgaaagacttgtttctatttctgagctacctaattgggctcag
caggcatttccaaactctgagaccttaactttgaatagaattcaatcaaaagtttaccca
attgcttttaaagaagatgagaacatattactgtgtgctcctactggttcgggaaaaact
aatgttgctttattgacaattttacgaaccatatcaaagtttagaaatcaagacactgga
acgcttgcattgaacaagtttaaaattgtttatattgcaccattaaaagctctagtccaa
gaacaagttagggaatttcagagaagatttgattcgtttggaatcaaagttggcgagtta
actggagactccaatttaacaaaacatcaaattaagtctactcaaattctggttacaacg
cctgaaaagtgggatatcattacaagaaagatgtcagatatttcgtatgtacgtttagtg
cggctactaattattgatgaaatccacttgctgcatgatgaaagaggtcctgtaatcgaa
agcatagtttcaagatcaattcgtaatgacgagatatcaggaaatgaaccagtaagattg
gttggtctttccgccactttgcccaactttaatgatgtcgccacttttttgagagttgat
gaaagcaaaggtttattctactttgatgggtcttaccgcccctgccccctggctcagcaa
tttgtgggtattctagaaaaaaaggcgttgaagcgatatcaagcgatgaaccaggcttgc
cttgataaggtgatagataatcttcaaggggatcaccaaattattgtttttgtgcactca
agggtagacacagctaaaacggcaagatatctaatggaaaatttaagtgcgtgcaataag
ttagaccttctccaaaaaacagatctcggctcaaaagaaattctcagggaagaatcaaag
tcttttagcagtgaagatctgagaaatctagttgtctcaggaatcggcattcatcatgcc
ggattgaacaagcaagatcgttctttggtagaagatttatttgcagatggatatgttcag
gttttagtttccacggcgacgttagcttggggtgtgaatcttcctgctcatactgttata
attaaggggacatctgtttattcccctgagaagggagtttggtctcagcttgctcctcaa
gacattcttcaaatgcttggaagagccggcaggcctcgttacgataagactggtgaagga
ataataataacagtccaggaagaagttcaatactacttggcaattttaaaccaacagcta
ccgattgaatcccaactcatgagtaagatacatgattgcttaaattctgagatcgtctta
ggaacagtaacctcacgacaggaagcggtttcgtggttttcttactcttacctatttgtt
cgtatgcttcgatctcctgcgttgtatcatgtgggccctgaatacagtcaagacaaaact
ctgctggaaatgagattggacatatgtcattcggctctcacccagctgcaaaagaatgga
ttgatatcatttgaccctttatccggaaaagtctggcccaattacttagggagaatctca
tcctacttctatattgaccacagtaccatatctcttttcaacaagtttctaaaaccatat
tctactgatattgatctactaagaatattcagtcaatcttctgaatttagatttattcct
gtgagattagatgaaaaactggagctgaaaaggattttacaaagcatccccattcctgtg
aaggatacagcagagaatccactcactaaggtcaatattttattacagtgttatatatct
catttgaaactggaaggttttgcaatagttcaggatatgatctatatcacccagtctgct
tccagaattcttagagctattcacgaaatagctctaaagaagaggtgggctacagtttca
aagtattctttggagttgtataaaatggtcaacaaacgaatgtggctttcaagctctccc
ttccgccagtttcctaatgttcatccagagataattagaaaaagcgaaagctctgttctt
ccttggagctattacctgggattgactgaatcttctgaaatggcacaggctattcgaagc
gaaaagcttgggcttgcaactttaaagctggtcaaacagtttccaaagttgactatgaat
gccaattttcaaccaattacccattcattgatgcgaattgaagtggtcatctatcccgaa
tgggaatggaatgtctccttacatgggtttgcagaatcgtttttgctacttgttgaggat
tgcaatggcgaaaggattcttttttgtgacacaatagtgataaagaaacaatacatcaaa
gaggagcatatcgttgaatttactgttccaatcctggagccctcagaacccaattatttt
attactctagtttctgaaaattggcttcaatgtgaatataagattcccttaatgttgaca
cacttgaaacgtccaaagaaatatcgaccccccacgccactagaagaagtgcctttgatt
cctgttcacaacttaaatttacctgagtgcaggactgtctttgatttcgaatttttcaat
aagtttcaaactcgagtattcaattcagtttttgagaccgacgcaagtgcccttatttgt
gccaataaggggtgcggaaaaactgtaattgctgagctagcccttcttcgactttggtgc
tctggtaacggaagagccatatatgtttcaccctgtgacgcaacaattgctaagatttat
aaaatctggaggaggaagttcaagtctgttgccggcggaaaggtcatcaaagtgcttact
ggtgaattaaactccgatctaaaattgttgtccatttcggatgtaatattggcaacaccg
gcgcatttagaccaactttgccgacgatggaagaatagaagtgttgttcaatcaattgaa
ctagtagttgccgatgattgccatactgttgggaatggctataatggattcatttacgaa
gttgccttatccaggattcgaataatggcaatccagttatccaaacctattcgaattgta
ggtctgagcaacccccttgctagggctgacgactttggaagttggttaggagtagagata
gatcacaactacaattttgactcgaaggaaaggattgcacctttggagatagagataaaa
tcctcagatattaaagagaaccattcgatgattcttgcaatgctgaagattggatttcag
gccatttcggacaagtttggtagctctgttgtctttctacccgatacagaactttgtttc
gaagtcggtcaagagcttttgacattatttagaaagcgaaattacaatggaagctctcag
aagtttcaacccccagttgactcaaaacacttggctggcatccgagatgtaaggctaaag
cacttaatctctcaaggcattgggattttatatcaagggatagctggcaatgatcagaat
acgatagagaacttgtatgaattaggctgtttgaaagttatcatatgctctcgagacgtt
gtctcattggcgccaccttgtgactttgcatgcgttatgggtactcaattttatgaaggg
agagaacacagatacatcgactattcaatatcagatatactcgaaatggtcggtgtctcg
tctttgcaagccctgattgttactaattctggaaaattggattactatacaaaatttctc
agtgaacccctaccagtggagagccacctttccctcttcctaactgatgcgtttgtcaat
gaaataagctgtcaggtggttagaaacagacaagattgtattgattggcttacctatacg
ttcttttacagacgattacagttaaatccgtcgtactatggtgtgaccgatgtttctagt
gtaggcttatctgagtatttatcagaactggtggaaactacggtgaatgaattaactgaa
tctcagatgattgagtttcaagaagtagatgatgatgaaattaaggatgttgttgagatt
gtaccactaacggcaacaatgattgcctcctactacaatgtctgtttctctactatgcaa
acattcatcctatcactttcaccgaaaacgaaattgaaagggatgttggagattgtggca
tctgccgcagagtttgattcaataccagttagaaaacatgaagagggtatcctgaaccgg
ctttacgatcaagtcccaatcaagtgtagtactggtgcaagcattgagtcccctcgagta
aaagccctaattttaatacaagcgcacttttcaaggactaaattgactcctgagctgcat
tatgatcaacaatttgtgctcagaaaaatgttaaacttggtatatacttgtgtggacatt
ttatcgggggaaggacacttgaatgccataacagctatggacctctctcagatggtagtc
caggggatttggaagaatgaaagtcccctgaagcagataccatttttcgataacgccgct
ttattgcgccgttgccaagaggcgagagtggaaactatatttgatatcatgtccatggaa
gacgatgagcgagacaatttgttgaagctatccaatgcgcagctccagaaagtagctgaa
ttcgtgaacaaattccccaatgttgatattgattacgagttggatatcactgaaggtact
ataatagttgacgaggagagagaaataatagttacacttaccagagatgaacaacctgag
gatctcactgttatttcttcggtatatccctatacaaaaacagagaactggtggctcgtt
attggttgctcccattcaaaagagctttatggtatcaaacgtacaagaatttctaaacag
caagagcaagttaaagttactttctcggttccttccccaggatcccacgagataacactc
tggtgcatgtgtgattcttatatggatgcagataaggaagtaagcttcgagcttagagtg
gaagataatcaaatccgtatatga
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integrated database retrieval system
