Komagataella phaffii: PAS_chr4_0201
Help
Entry
PAS_chr4_0201 CDS
T01092
Name
(RefSeq) Essential ATP-dependent RNA helicase of the DEAD-box protein family
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr4_0201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr4_0201
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr4_0201
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr4_0201
Spliceosome [BR:
ppa03041
]
Complex A
U1 snRNP components
U1 related factors
PAS_chr4_0201
Complex B
PAS_chr4_0201
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
Pre-60S particles
Helicases
PAS_chr4_0201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
8201107
NCBI-ProteinID:
XP_002493605
UniProt:
C4R751
LinkDB
All DBs
Position
4:complement(join(409081..409460,409901..411134))
Genome browser
AA seq
537 aa
AA seq
DB search
MTYNNGGYDNGSYGNGGGYNNGGFNGGFRGGRGGGNYDSYDSFGSNLKVQEWDLDKMPKF
EKNFYNEHPDVTARTQEDVEAFRKEHDMNCYGKDIPKPITSFDEAGFPDYVLTAVKAQGF
PSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPAIVHINAQPLLKPGDGPVALVLA
PTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQIRDLARGAEIVIATPGRLIDMLET
GKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKSVQALARDYL
HDYIQVNVGSLELAASHNIKQVIEVLSEYEKRDRLTKYLEQASEDKTSKILVFASTKRTC
DELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGKSPIMVATDVAARGIDVKGINFVV
NYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANARMADDLVPILKEANQIIPEDLQAM
CRRRGGFGGGRGGRGGRGGRGGRGGRGGYGGNRGFGGGNGGYRSSGANNAPLPNRKF
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgacttacaacaacggtggatacgacaatggcagctacggaaatggtggcggctataac
aatggtggattcaatggcggattcagaggcggaagaggcggaggaaactacgactcttac
gactcctttggaagtaacctgaaggttcaggaatgggacttggacaagatgccaaagttt
gagaagaacttctacaacgagcacccagatgtcactgctagaacccaagaagatgttgaa
gctttcagaaaggagcacgacatgaactgttacggaaaggatattcctaagccaattaca
tcttttgacgaggctggtttcccagattacgttttaacagccgtcaaggctcagggtttc
ccttctccaactgcaattcaatgtcaagggtggcctatggctcttggtggtaaagatatg
gtcggtatcgctgctactggttctggtaagactttgtcttactgtttaccagctattgtg
catatcaatgctcagcctttgctgaaacctggtgatggccctgttgctttagttttggct
cctaccagagaattggctgttcagattcaaaaggaatgttccaagtttggctcttcctcc
agaatcagaaacacttgtgtctatggtggtgttccaaagggccaacaaatcagagatttg
gctagaggtgcagagatcgtcattgctaccccgggcagattgattgatatgttggagact
gggaagaccaacctgagaagagttacttacttagttttagatgaggctgacagaatgttg
gacatgggtttcgaaccacaaatcagaaagattgttgatcaaattagaccagacagacaa
actttaatgtggtccgctacctggcccaagtctgttcaagccttggcaagggactactta
cacgactacattcaagttaatgtcggttccttggagctggctgcttctcacaacattaaa
caggttatcgaagttttgagcgagtacgaaaagcgtgacagactaaccaaatatttagaa
caagctagtgaagacaaaacttccaagattttggtctttgcttccacaaagagaacatgt
gatgaactaactacttatcttagaagtgacggatggcccgcattggccatccacggtgac
aaagaacaacgtgagcgtgactgggttttgcaagagtttagatccggtaaatccccaatc
atggtagctaccgatgtggcagctagaggtattgatgtcaagggtatcaactttgttgtc
aactatgacatgccaggtaacattgaagactacgttcatcgtattggtagaaccggtaga
gctggtgccactggtactgctgtttctttcttcaccaacgcaaacgccagaatggctgac
gatttagttcccatccttaaggaggccaaccaaatcattccagaagacttacaagctatg
tgccgtagaagaggtggattcggtggaggaagaggcggccgtggtggtcgtggtggacgc
ggtggccgtggtggccgtggtggttacggtggtaaccgtggattcggaggtggtaatggt
ggatacagatccagcggtgccaacaacgctcctcttccaaacagaaaattctag
DBGET
integrated database retrieval system
