Paenibacillus pabuli: KET34_07115
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Entry
KET34_07115 CDS
T09669
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppab
Paenibacillus pabuli
Pathway
ppab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KET34_07115 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppab03400
]
KET34_07115 (ligD)
Enzymes [BR:
ppab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KET34_07115 (ligD)
DNA repair and recombination proteins [BR:
ppab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KET34_07115 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UPK45254
LinkDB
All DBs
Position
complement(1606586..1607476)
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AA seq
296 aa
AA seq
DB search
MAHTIKGTITINGTELTVTNPDKLLWPEAGVTKAIYLQKLAALAPYLLTYTRNRLLTTIR
YPHGAGGDFFYQKNAPDPVPEFVRTEVHEGIRYVVMDNLPDLLWLGNLAALEFHPSLHAV
GSHLPCEWMIDLDPSQEEEPRIMQAALIVGETLTSLGLRSVPKTSGATGIQIIVPIRQGV
TFDQLRDIGYFVGKYVTQKHPDLFTLERLKKDRGDRIYFDYLQHYGGKTLAAPYTPRAKP
GGTVSTPLTWDEVRKNVSVKDYHLMNIVERLTQTGDLIAAVEPQPVELIIQHLKQK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccacacaataaagggcaccataacaattaatggaacggagcttaccgtaaccaat
ccggacaagttgttatggcccgaagcaggtgtaaccaaggctatctatttgcaaaaactg
gctgcactggctccctatctgcttacttacacacgcaaccggcttcttaccacgatacgt
tacccacatggtgcaggcggcgattttttctaccagaagaatgctccagatcccgttcca
gagtttgtacgaaccgaggtgcatgaggggatacgatatgtagtgatggacaaccttcct
gatctattatggcttggcaacctagccgctctggagtttcacccttccttgcatgctgta
ggcagccatctgccttgcgagtggatgattgatcttgatccttcgcaggaagaagagcct
cgcattatgcaagctgctctgatcgtgggagaaacgctgacttcgcttggtttgagatcc
gtaccaaaaacctctggtgccacaggtatacaaattattgttccgatccgccaaggagta
accttcgatcaattaagggacatcggttattttgtaggcaaatacgtcactcaaaaacat
ccggatctatttacactggaacgccttaaaaaagaccgaggggatcgcatttattttgat
tacctgcaacattacggcggcaaaacgctcgcagctccctacacaccccgtgccaaacca
gggggtactgtatctactccgcttacctgggacgaggttcggaaaaacgtatcggttaag
gattaccacttgatgaatattgtggagcgcctaacgcaaaccggagacctgatcgccgct
gtcgaaccccagcctgttgagctaatcatccagcatttaaaacaaaaatag
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