Pteronotus mesoamericanus (Parnell's mustached bat): 129072507
Help
Entry
129072507 CDS
T09558
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppam03019
]
129072507
Enzymes [BR:
ppam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129072507
Messenger RNA biogenesis [BR:
ppam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129072507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF1512
Motif
Other DBs
NCBI-GeneID:
129072507
NCBI-ProteinID:
XP_054431952
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MASAPPMLNEKSSPSNSESESERESDAESDSSDDSETVESLSSFDQSEEEDHLSSEDMIR
EEPASGQLLCEFEIDKEKPSDVEATDDSSYDLERSESTEYKKILRTLSLLIWNTLSKSQM
VSLLKDFVETECFLIDGDSLFITCVLNVNFKKGQTLHFFYIVEQFLHDFIQKEARFIIVF
FKDAENLYFNYPELLALRTILIQHLEYNTDVTIHTEFSNCLTPEWEIFLKECYPYFLIVS
XKGITPHQTQFLNIFSIHALQKKINIVQPLGMESDVLRIYGYYASSRYLHREFFEMHKKQ
LQHALHAYILEYYQKSQEKEIFLYGHLRLNLGEMQKEIHQTLSLLHTLCPEGADVRSVVC
SISCAVTLKLFTKMLHDAEDSENPPTCTENQNAQDLKKTPTLNEAAYLCRMHCLSVIFLQ
RLPLCQRAKSRIITSIWDRTLTPFLRMLNYCKFFTLKQLKARSNWNLNFTGLPDLTDNSL
WKNIAYYYEIEYSRGLTLELGDTLNQGYEKLWNTVLTLSGDGDFGGPSPVRTTSRPFLTH
KETSSKGSSQEIHKLGLIPLKAEIIEDYAGDILSELPFLSSDDPAVISLSERKEFDELIH
WHSSRLLSDDFERMKYSRDAKYKGIKERREIQKLQCFYHLFGKSMIGSNRSVRVIRGRDL
PPPENSSVQKKRKPQKTNAEKIIEENQKKQLAKLEKKEEERWNNLSKCIQKEIKENPDSG
VKRLEDFIQICPVKSIKFAAEMVGLDACFKLWMEHCSKPEEGSRDISIIINLMKRIHVIH
EKHSELLQTTHRQKIAKYLKYIGFDNLAHLLCPQVQESGTEKDISKYSVHVGAARFQLTY
MGPYLFREERSDPDPRVYHFIPDTWQRELLDVIDNNESAVIVAPTSSGKTYASYYCMEKI
LRESDDGVVVYVAPTKALVNQVVGTVYSLFTKTLPTGLTVCGVFTRDYRHDTFNCQVGHT
FKXKLLNFTEXYLRFFKIIKRIKIVHVHCLGGEIGAEVWEHLLVMIRCPFLALSATISNP
EHLTEWLVLIKRYWQHVESTIENSGPSQNAWKGAKKQQRKRTEKPSYRVRLVWYKERYND
LEKYVCSLKDNDFIIEHYHPCAALTVQHIEKYGIPLGLGFSPRESVLLYDAMAHVWPEWT
RMQELEPEEFSYFKNKIVIMRTDAKKYEEELKKEVIHWIQLDRSKVNELLKYLKPQTFDS
AETEKQRMFPCFVEKLKEMNKLPAIFFSFNIHSVERSASRLLTNLIIKQNTHNDPNSERE
KKNLNKKLWKAIKSQRRNYAVFLNSDSGARIQRMIVLKSKITEMKKNLKKYYEVTPGCTY
ADRTVVDSQTLSKIVYRLRGTRKSYKLHGLLKRGIGYHYGPMEYKQRQVVEILFRLKHVQ
VVTATSSLALGINMPCKSVVFMEDSVFLDALNFRQMSGRAGRRGEDLTGNVFFYDIPLPK
IERLLKSNVPKLKGQFPLSISLVLRLLLLVAKADDKEDAKAKALSVLQHSLMSFKQPKIK
CMLKFYFIYSLQFLVREEYLNQECIPIGYSGLVSHLHYHEPANFVLVSLLKKGLFHKLCI
PTSINGQKSFSEDVMETLVVVLANLFGRRYLPPCVNNFEMRISRSEVILDDLPKEFAEVV
EEHNNTIQKNFGSFLLTISKLADMRKEYQLPLSEIDFSGKECEDSELVSHLMPGTESRTA
VSPFACLSNITDQDLFHINVVNDAMLRTTKVDVTKVPFFQLTKYDKNGRKCPLNGYVLNF
YKNRSLSGLTSDNWLNMGDAYHLLKDFALTVQSIRISLSELCDDEDDNVVLAFKQLSKTF
SQILGKKG
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctcctatgttaaatgaaaaatcaagccctagtaacagcgaaagtgag
agtgagagggagagcgatgctgaaagtgacagctctgatgacagtgagaccgtggagagc
ttgtcctcatttgatcaatccgaagaagaagatcatctaagctcagaagacatgataaga
gaagagccagcttctgggcagttgctgtgtgagtttgaaatcgacaaagaaaaaccttca
gatgttgaagctacagatgatagcagctatgatttagaaagatcagaatcaactgaatat
aagaaaattctgaggacgctctcattgttgatttggaatactctgtcaaaatctcaaatg
gtgagcttacttaaagactttgttgagactgaatgttttttgattgatggagattcacta
ttcatcacttgtgttttaaatgtgaacttcaagaaaggacagactcttcacttcttctac
attgtagaacaatttctgcatgatttcattcaaaaggaagccagatttataatagttttt
tttaaggatgcagaaaatctgtattttaattaccctgaacttctggcccttcgtaccata
ttgattcaacatttagagtacaatactgatgtcactattcatacagaattttccaactgt
ctgacaccagaatgggagatatttcttaaagaatgttatccatatttcctaattgtctca
taaaagggaataacacctcatcaaacgcagtttttaaacatttttagcattcatgctctt
cagaagaaaatcaatattgtacagcctttaggaatggagtcagatgtccttagaatttat
ggatactatgcctcaagtcgctatttacacagagagttttttgaaatgcataagaaacag
ctgcaacatgccttacatgcctacatactggagtattaccaaaagtcacaggaaaaagaa
atatttctgtacggtcatttgaggctaaacttgggagaaatgcagaaagagatacatcaa
accttgtccttgcttcacactctgtgccctgaaggagctgacgtgcgaagtgttgtctgc
tctatttcatgtgctgtgacactaaaactctttacaaaaatgttacatgatgcagaagat
agtgaaaacccacccacctgcacagaaaatcaaaacgcacaggacttgaagaaaacacca
acactaaatgaagcagcatatctttgcagaatgcactgtcttagtgtgattttccttcaa
cgtttacccctgtgtcaaagagctaagagtagaatcattacttctatttgggacagaaca
cttacaccatttttaagaatgttaaattattgtaaattttttaccctgaaacaattaaag
gctagaagtaattggaatctgaatttcactggcttacctgacctaactgataatagtttg
tggaaaaatattgcttattattatgaaattgaatatagtagaggactaaccctggaattg
ggtgacacgttgaaccaggggtatgagaagttgtggaacacagttttaacattatctggg
gatggtgatttcggagggccttcgcctgtgaggacaacatccagaccatttcttacacac
aaagaaacatcatctaaaggatcaagtcaagaaattcacaaattaggactcattcctctg
aaagctgagattatagaagattatgctggagatattttgtcagaactaccttttctaagc
agtgatgacccagctgttatatctctttctgagaggaaagaatttgatgaactcatacac
tggcattcttctaggcttctcagtgatgattttgaaaggatgaagtacagcagggatgct
aaatacaaaggcatcaaagaaagaagggaaatacagaaattacagtgtttctatcacctc
tttggaaaatctatgataggaagtaacagatcagtaagagttataagaggaagagatctg
ccacctccagaaaattcttcagtgcaaaagaaaagaaaaccccagaagacaaatgcagaa
aaaattattgaggaaaatcaaaagaaacagctagccaaactagagaaaaaagaggaagaa
agatggaataatttgtccaaatgtattcaaaaggaaattaaagaaaatcctgactctgga
gtaaaaagactagaagattttatccaaatatgccctgttaaatctataaaatttgctgca
gaaatggtaggattggatgcctgtttcaaattatggatggagcactgttcaaaaccagaa
gaaggatccagagatatcagcataataattaacttgatgaaaaggattcatgtaattcat
gaaaaacattcagaactattacaaactacacatcgacaaaaaatagctaaatatctaaaa
tatattggttttgacaacttggcacacttattatgtcctcaggtgcaggaatcaggtact
gagaaggatatttctaaatattcagttcacgtgggagcagctcggtttcaattaacatat
atgggaccttacttatttcgagaagaaagaagtgatccagaccccagagtgtatcatttt
atacctgacacatggcagagggaacttcttgatgtcatagataataatgaatctgctgta
attgttgctccaacttcatcagggaaaacctatgcttcttactactgcatggagaaaatc
ttgagagagagcgatgatggggtggttgtgtatgttgctccaacaaaggctcttgttaat
caagtggtaggaactgtctacagtttatttaccaaaacactgccaacaggattaactgtg
tgtggagtttttacaagagattaccgtcatgataccttcaattgtcaggtaggtcatact
tttaaatagaaattgttaaactttactgagtgatacttaagattttttaaaataataaaa
agaataaagatagtccatgttcactgtcttgggggagaaattggagcagaagtttgggaa
catcttcttgtcatgatccgatgtccctttctggcactttctgctactatcagtaatcct
gaacatcttactgaatggttggtgttaattaaaagatactggcagcatgttgaaagcaca
atcgaaaattctggtccatcacaaaatgcctggaaaggtgcaaagaaacaacaaagaaaa
agaacagaaaagccatcatacagagttagattggtgtggtacaaagagcgatacaatgac
ctggaaaagtatgtgtgttccctaaaggataatgattttatcattgaacactatcaccca
tgtgctgcacttacagtccaacatatagagaaatatggaatccctttaggtcttggattt
tctccacgggaaagcgtactgctatatgatgcaatggcacatgtttggccagaatggaca
aggatgcaggagttagaacctgaagaattcagctacttcaaaaataaaatagtcattatg
aggacagatgccaagaaatatgaagaagagctgaaaaaggaagtgattcattggattcag
ctggaccgaagcaaggtgaatgaattactgaagtaccttaagcctcaaacttttgacagt
gcagaaactgaaaagcaaagaatgtttccttgttttgtggaaaaacttaaagaaatgaat
aagctgcctgcaatattcttttcattcaacattcactcagtggaacgatcagcttcacga
cttcttacaaatctgataatcaaacagaatactcataatgatccaaattctgaaagagag
aagaaaaatttgaacaagaaactatggaaagcaataaagtctcaaagaagaaattatgct
gtatttttaaattcagattcaggtgctagaattcaaagaatgattgtattaaaatctaaa
ataacggaaatgaagaaaaaccttaagaagtattatgaagtgaccccaggctgtacttat
gcagaccgtacagttgtggacagtcagactttatcaaagatcgtatacagactgagagga
acaagaaaaagctacaaactgcacggtctgttaaagcggggcatcggatatcattatggt
ccaatggagtataaacaaagacaagttgtagagatacttttcagactgaaacacgtccag
gtggtaacagctacctcttcccttgctttgggaattaacatgccatgtaaatctgttgtt
tttatggaagattctgtttttttggatgccttgaactttcgacagatgtctggtcgtgca
ggaagacgtggtgaagatcttacaggaaatgtgttcttctatgatattccattacctaag
atagaaaggctcttaaagtcaaatgtgcccaaactgaagggtcagtttcctttaagcatt
tccttggttctcagacttctgcttttagttgccaaagcagatgacaaagaggatgccaaa
gcaaaggcattatcagttctccagcattcactgatgtccttcaagcaaccaaagatcaag
tgcatgttaaagttttactttatatattctttgcaatttttggtcagagaggaatacttg
aatcaagaatgtattcccattggatattctggacttgtgtcccatttgcactaccatgaa
cctgcaaactttgttttagtaagcttgctgaagaaaggtttatttcacaagttgtgtatt
ccaaccagcataaatggccaaaagagcttttctgaagatgtgatggaaaccttagtggtc
gtgttagcaaatcttttcggaagacggtatctccctccctgtgtgaacaattttgaaatg
agaatttctcgttcagaggtaattctagatgatcttcccaaggaatttgctgaagtggta
gaggaacacaacaacacaattcagaagaattttggttccttcctcctaacgatttctaag
ttggcggacatgagaaaagaataccaactacctctctcagaaattgacttttcaggtaaa
gaatgtgaagactctgaattggtctctcatttgatgcctggaactgagagcagaactgct
gtctccccatttgcttgcctgtcaaacataactgatcaagatttatttcatattaatgtg
gtgaatgatgctatgctacgaacaactaaagtggatgttacaaaagttcctttctttcag
ttgactaaatatgataagaatggaaggaagtgtccattgaatggttatgtattgaatttc
tacaaaaaccgttccctatcaggactcacttcggataattggttaaatatgggagatgct
tatcatttactgaaagattttgcacttactgttcagtccatcaggatttcactgagtgaa
ttatgtgatgatgaagatgacaatgttgtgttagcatttaaacaattaagtaaaacattc
agtcaaatcttaggaaaaaaaggctaa
DBGET
integrated database retrieval system
