Pteronotus mesoamericanus (Parnell's mustached bat): 129082789
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Entry
129082789 CDS
T09558
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03030
DNA replication
ppam03410
Base excision repair
ppam03420
Nucleotide excision repair
ppam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129082789 (LIG1)
03410 Base excision repair
129082789 (LIG1)
03420 Nucleotide excision repair
129082789 (LIG1)
03430 Mismatch repair
129082789 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppam03032
]
129082789 (LIG1)
03400 DNA repair and recombination proteins [BR:
ppam03400
]
129082789 (LIG1)
Enzymes [BR:
ppam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129082789 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129082789 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129082789 (LIG1)
DNA replication proteins [BR:
ppam03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129082789 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129082789 (LIG1)
DNA repair and recombination proteins [BR:
ppam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129082789 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129082789 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129082789 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
129082789
NCBI-ProteinID:
XP_054444495
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MQRTIMSFFHPKKEGKTKKPEETSNSIRETEPPPKVALKERNRAVPESESPVKRPGRRAA
RVLCSDGEEDDDEAITPPKGQKPAPDSPQVSPPSPVTVPESSPALSSTSPVHISPSGIPK
RRTARKQLSKRTIQDVLEEHNEDKERKTKRKREEEEAETPRESLPEPEGAKEKEAEEGDL
PPTPSEPQDTCKAEVLAESSSEPEARDQDQAKPPPRVPKALSSFFTPRKPAIKKEVKEAE
PGTPRKEEPKGLSHSDVSSSPLDPSSYNPAKNNYHPVHDACWKQGQKVPYLAVARTFEKI
EEVSARLRIVEMLSNLLRSAVALSPPDLLPILYLSLNCLGPPQQGLELGVGDGVLLKAVA
QATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPALTASGVFAKFRDIARLTGSAS
TTKKMDIIKGLFVACRHSEARFIARALSGQLRLGLAEQSVLAALAQAVSLTPPGQEFPPA
VVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVP
LKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHFLEGGEVKIFSRNQEDNTGKYP
DVISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYA
FDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSC
EGLMVKTLDVHATYEIAKRSHNWLKLKKDYLNGVGDTLDLVVIGAYLGRGKRAGRYGGFL
LACYDEESEEFQAICKLGTGFSDEELEEHHRSLQALVLPAPRSYVRADGAVAPDHWLEPS
IVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRIREDKKPEAATTGAQVASLYRK
QSQIQNQQGADADSDLEGFY
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaactatcatgtcatttttccaccccaagaaagagggcaaaacaaagaaacca
gaggagacctccaacagcatcagagagacagagccccctccaaaggtggcgctgaaggag
cggaatagagcggtgccagagagcgaatctccagtgaagaggccggggaggagggcggcc
cgggtcctgtgcagcgatggggaggaggatgatgatgaagccatcacgccccctaaaggc
cagaagcctgcccccgactccccacaagtgtcccctcccagtcccgtcacggttcccgag
agcagccctgccctctccagcacgtctccggtgcacatctccccgtctgggatccccaag
cgtcgcacagctcggaagcagctttctaaacggacgattcaggatgttctcgaagagcac
aacgaggacaaggagagaaaaaccaagaggaagagggaggaagaagaagcagagacccca
agagaaagcctcccagagccagaaggagccaaagagaaggaagcagaagagggggacctg
ccgccgacgccctctgagccccaggacacctgcaaagcggaggtcctggcagaaagcagc
tcagagcctgaggcccgggaccaggaccaggcgaagcctcccccgagagttcccaaggcg
ctgagcagtttcttcactccccggaagccagcaatcaaaaaggaggtgaaagaagcggag
cctggcaccccacgaaaggaggagcccaagggactctcccactcggatgtgagctccagc
ccgctggacccatccagctacaaccctgcgaagaacaactaccatcccgtccatgacgcg
tgctggaagcagggccagaaggtcccttacctggctgtggcccgaacttttgagaagatc
gaggaggtttctgctcggctccggatcgtggagatgctgagcaacttgcttcgctccgcg
gtggccctgtcacctccagacctcctccccatcctctacctcagtctcaactgcctgggg
ccaccccagcagggcctggagcttggtgtcggagatggtgtcctcctcaaggcggtggca
caagccacaggccggcagctcgagtctgtccgggctgaggcagccgagaagggcgatgtg
gggctggtggccgagaacagccgcagcacccagagactcatgctgcccccgcccgccctc
accgcctccggggtcttcgccaagttccgagacatcgcccgcctcaccggcagtgcttcc
acaacaaaaaagatggacatcatcaaaggcctcttcgttgcctgccgccactcggaagcc
cggttcattgccagagccctgagtggacagctgcgcctcgggctggcggagcagtcggtg
ctggccgccctcgcccaggctgtgagcctcacgcccccaggccaagaattccccccggct
gtggtggatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaa
ggcatgattctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtccctgtg
ctgctggagcacggcctggagcggctcccggagcactgcaggctgagtccaggggtcccc
ctgaaaccaatgttggcccaccccacccggggtgtcagcgaggtcctgaaacgctttgag
gaggccgccttcacctgcgagtacaaatacgacgggcagagggcacagatccattttcta
gaaggcggggaggtgaagatcttcagtaggaatcaggaagacaacaccgggaagtaccct
gacgtcatcagccgcatccccaagataaaactcccgtcagtcacatctttcattctggac
gcggaagcggtggcttgggaccgggaaaagaagcagatccagccgttccaagtgctcacc
acccgcaaacgcaaggaggtggacgcagcggagatccaggtgcaggtgtgtttgtacgcc
ttcgatctcatctatctcaatggagagtctctggtacgcgagcccctctccaggcgccgg
cagctgctccgggagaactttgtggagacagagggtgagtttgtcttcgccacctcgttg
gacaccaaggacacagagcagatcgccgagttcttggagcagtcggtgaaagactcctgc
gaggggctgatggtgaaaaccctggacgtccatgccacctacgagattgccaagaggtcg
cacaactggctcaagctgaagaaggactacctgaacggagtgggcgacaccctggatctc
gtggtgatcggcgcctacctgggccgcgggaagcgggccggccgctacgggggcttcctg
ctggcctgctacgacgaggagagcgaggagttccaggccatatgcaagctcggcactggc
ttcagcgacgaggagctggaggagcaccaccggagcctccaggccctggtgctgcccgcc
ccgcgctcctacgtccgggcagacggtgctgtggcccccgaccactggctggagcccagc
atcgtatgggaggtcaagtgcgccgatctctccctctcccccatctaccctgctgcccgg
ggcctggtggacagtgagaaggggatctcccttcgcttccctcggtttattcgcattcgt
gaggacaagaagccggaggcggccaccaccggtgcccaggtggcctctctgtacaggaag
caaagtcagatccagaaccagcagggcgcagacgcggactccgacctggagggcttctac
tag
DBGET
integrated database retrieval system