KEGG   Pteronotus mesoamericanus (Parnell's mustached bat): 129082789
Entry
129082789         CDS       T09558                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ppam  Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03030  DNA replication
ppam03410  Base excision repair
ppam03420  Nucleotide excision repair
ppam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129082789 (LIG1)
   03410 Base excision repair
    129082789 (LIG1)
   03420 Nucleotide excision repair
    129082789 (LIG1)
   03430 Mismatch repair
    129082789 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppam03032]
    129082789 (LIG1)
   03400 DNA repair and recombination proteins [BR:ppam03400]
    129082789 (LIG1)
Enzymes [BR:ppam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     129082789 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     129082789 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     129082789 (LIG1)
DNA replication proteins [BR:ppam03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    129082789 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     129082789 (LIG1)
DNA repair and recombination proteins [BR:ppam03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     129082789 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     129082789 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     129082789 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Other DBs
NCBI-GeneID: 129082789
NCBI-ProteinID: XP_054444495
LinkDB
Position
Unknown
AA seq 920 aa
MQRTIMSFFHPKKEGKTKKPEETSNSIRETEPPPKVALKERNRAVPESESPVKRPGRRAA
RVLCSDGEEDDDEAITPPKGQKPAPDSPQVSPPSPVTVPESSPALSSTSPVHISPSGIPK
RRTARKQLSKRTIQDVLEEHNEDKERKTKRKREEEEAETPRESLPEPEGAKEKEAEEGDL
PPTPSEPQDTCKAEVLAESSSEPEARDQDQAKPPPRVPKALSSFFTPRKPAIKKEVKEAE
PGTPRKEEPKGLSHSDVSSSPLDPSSYNPAKNNYHPVHDACWKQGQKVPYLAVARTFEKI
EEVSARLRIVEMLSNLLRSAVALSPPDLLPILYLSLNCLGPPQQGLELGVGDGVLLKAVA
QATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPALTASGVFAKFRDIARLTGSAS
TTKKMDIIKGLFVACRHSEARFIARALSGQLRLGLAEQSVLAALAQAVSLTPPGQEFPPA
VVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGVP
LKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHFLEGGEVKIFSRNQEDNTGKYP
DVISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYA
FDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSC
EGLMVKTLDVHATYEIAKRSHNWLKLKKDYLNGVGDTLDLVVIGAYLGRGKRAGRYGGFL
LACYDEESEEFQAICKLGTGFSDEELEEHHRSLQALVLPAPRSYVRADGAVAPDHWLEPS
IVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRIREDKKPEAATTGAQVASLYRK
QSQIQNQQGADADSDLEGFY
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgcagcgaactatcatgtcatttttccaccccaagaaagagggcaaaacaaagaaacca
gaggagacctccaacagcatcagagagacagagccccctccaaaggtggcgctgaaggag
cggaatagagcggtgccagagagcgaatctccagtgaagaggccggggaggagggcggcc
cgggtcctgtgcagcgatggggaggaggatgatgatgaagccatcacgccccctaaaggc
cagaagcctgcccccgactccccacaagtgtcccctcccagtcccgtcacggttcccgag
agcagccctgccctctccagcacgtctccggtgcacatctccccgtctgggatccccaag
cgtcgcacagctcggaagcagctttctaaacggacgattcaggatgttctcgaagagcac
aacgaggacaaggagagaaaaaccaagaggaagagggaggaagaagaagcagagacccca
agagaaagcctcccagagccagaaggagccaaagagaaggaagcagaagagggggacctg
ccgccgacgccctctgagccccaggacacctgcaaagcggaggtcctggcagaaagcagc
tcagagcctgaggcccgggaccaggaccaggcgaagcctcccccgagagttcccaaggcg
ctgagcagtttcttcactccccggaagccagcaatcaaaaaggaggtgaaagaagcggag
cctggcaccccacgaaaggaggagcccaagggactctcccactcggatgtgagctccagc
ccgctggacccatccagctacaaccctgcgaagaacaactaccatcccgtccatgacgcg
tgctggaagcagggccagaaggtcccttacctggctgtggcccgaacttttgagaagatc
gaggaggtttctgctcggctccggatcgtggagatgctgagcaacttgcttcgctccgcg
gtggccctgtcacctccagacctcctccccatcctctacctcagtctcaactgcctgggg
ccaccccagcagggcctggagcttggtgtcggagatggtgtcctcctcaaggcggtggca
caagccacaggccggcagctcgagtctgtccgggctgaggcagccgagaagggcgatgtg
gggctggtggccgagaacagccgcagcacccagagactcatgctgcccccgcccgccctc
accgcctccggggtcttcgccaagttccgagacatcgcccgcctcaccggcagtgcttcc
acaacaaaaaagatggacatcatcaaaggcctcttcgttgcctgccgccactcggaagcc
cggttcattgccagagccctgagtggacagctgcgcctcgggctggcggagcagtcggtg
ctggccgccctcgcccaggctgtgagcctcacgcccccaggccaagaattccccccggct
gtggtggatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaa
ggcatgattctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtccctgtg
ctgctggagcacggcctggagcggctcccggagcactgcaggctgagtccaggggtcccc
ctgaaaccaatgttggcccaccccacccggggtgtcagcgaggtcctgaaacgctttgag
gaggccgccttcacctgcgagtacaaatacgacgggcagagggcacagatccattttcta
gaaggcggggaggtgaagatcttcagtaggaatcaggaagacaacaccgggaagtaccct
gacgtcatcagccgcatccccaagataaaactcccgtcagtcacatctttcattctggac
gcggaagcggtggcttgggaccgggaaaagaagcagatccagccgttccaagtgctcacc
acccgcaaacgcaaggaggtggacgcagcggagatccaggtgcaggtgtgtttgtacgcc
ttcgatctcatctatctcaatggagagtctctggtacgcgagcccctctccaggcgccgg
cagctgctccgggagaactttgtggagacagagggtgagtttgtcttcgccacctcgttg
gacaccaaggacacagagcagatcgccgagttcttggagcagtcggtgaaagactcctgc
gaggggctgatggtgaaaaccctggacgtccatgccacctacgagattgccaagaggtcg
cacaactggctcaagctgaagaaggactacctgaacggagtgggcgacaccctggatctc
gtggtgatcggcgcctacctgggccgcgggaagcgggccggccgctacgggggcttcctg
ctggcctgctacgacgaggagagcgaggagttccaggccatatgcaagctcggcactggc
ttcagcgacgaggagctggaggagcaccaccggagcctccaggccctggtgctgcccgcc
ccgcgctcctacgtccgggcagacggtgctgtggcccccgaccactggctggagcccagc
atcgtatgggaggtcaagtgcgccgatctctccctctcccccatctaccctgctgcccgg
ggcctggtggacagtgagaaggggatctcccttcgcttccctcggtttattcgcattcgt
gaggacaagaagccggaggcggccaccaccggtgcccaggtggcctctctgtacaggaag
caaagtcagatccagaaccagcagggcgcagacgcggactccgacctggagggcttctac
tag

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