Paracoccus pantotrophus: ESD82_05740
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Entry
ESD82_05740 CDS
T06495
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppan
Paracoccus pantotrophus
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppan03016
]
ESD82_05740 (rnd)
Enzymes [BR:
ppan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ESD82_05740 (rnd)
Transfer RNA biogenesis [BR:
ppan03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ESD82_05740 (rnd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QFG35662
LinkDB
All DBs
Position
2:complement(1189167..1190375)
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AA seq
402 aa
AA seq
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MPAKATNDQKPEIRTLTTTAELAEFCALAKAQPYVTLDTEFLRERTYYSRLCLIQAALPP
ASAAKAPGGSAVLIDPLVEGLSLEPLYDLFRHKATVKVFHAARQDLEIFFHDAGVMPDPL
FDTQIAAMVCGFGEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLR
AIYEFLSAQLDKTGRAPWLAEEVAVLLDPETYITRPEEAWERVRTRSGSPRFLAVVRELA
RFRESFAQERDIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIASGILAAV
KAGVEARDLPKPAPEEPGRPGNAALADLLRVLLKAKADAAGVAPRLIASASDLDAIASGA
RDLPALHGWRAEVFGRDALRLAAGEIALSAQGGAVKVVPVAP
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaaaagccacgaacgatcaaaagcccgagatccgcaccctgaccaccacggcc
gaactggccgagttctgcgccctggccaaggcccagccctatgtcacgctcgacaccgag
ttcctgcgcgagcggacctattattcccggctatgcctgatccaggcggcgttgccgccg
gcctcggccgcgaaggcgccgggcggctctgccgtgctgatcgacccgctggtcgagggg
ctgtcgctcgaaccgctctacgaccttttccgccacaaggcgacggtcaaggtcttccac
gccgcgcggcaggatctggagatcttcttccacgacgcgggcgtgatgcctgacccgctg
ttcgacacccagatcgccgccatggtctgcggcttcggcgagcaggtcggctacgagacg
ctggtcaagaagatcgcccgccagcccttggacaagtcctcgcgtttcaccgactggtcg
caccggccgctttcggatgcccaggccgcctatgcgctggccgacgtgacgcatctgcgc
gcgatctacgagttcctctcggcccagctcgacaagaccgggcgcgcgccctggctggcc
gaggaggtcgcggtgctgctggaccccgaaacctatatcacccgccccgaggaggcctgg
gagcgggtgcgcacccgctccggctcgccgcgcttcctggccgtggtgcgcgaactcgcg
cgcttccgcgaaagctttgcccaggaacgcgacatcccccgcgcccgcgtgttcaaggac
gatgcgctgatcgagctggcctcgaccaagccgctctccgaggccgatctggccaagtcg
cggctgcttctgcgcgacgcccgccggggcgagatcgcaagcggcatcctggccgcggtc
aaggccggggtcgaggcgcgcgacctgcccaagcccgcccccgaggagccgggccgtccg
ggcaatgccgcgttggcggatctgctgcgggtgctgctgaaggccaaggccgatgcggcc
ggggtggcgccgcggctgatcgcctcggcctcggacctggacgccattgcctcgggcgca
cgcgacctgccggcgctgcatggctggcgggccgaggtcttcggccgcgacgcgctgcgg
ctggcggcgggcgagatcgcgctttccgcccagggcggtgcggtcaaggtggtgccggtg
gccccttaa
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