Paracoccus pantotrophus: ESD82_14815
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Entry
ESD82_14815 CDS
T06495
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppan
Paracoccus pantotrophus
Pathway
ppan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ESD82_14815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppan03019
]
ESD82_14815
Enzymes [BR:
ppan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ESD82_14815
Messenger RNA biogenesis [BR:
ppan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ESD82_14815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DEDD_Tnp_IS110
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QFG37412
LinkDB
All DBs
Position
1:complement(887030..888472)
Genome browser
AA seq
480 aa
AA seq
DB search
MRADTRATWPKDDMTNETTRPNRSGNPRAQQGGKPRFRNDKPNTNHRRHRAEPEEKFIRR
AIPDIDTAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAA
FGLPMLTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASI
NVQVQRLERGVDVLIATPGRLIDLIERGAIDLSQTKYLVLDEADQMLDIGFIHALRRIAK
MLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAAKIDQGVHFVNQGDKATL
LAEYLSKHVDELAIVFGRTKHGSEKLSKLLEKWGYKVAAIHGNKSQGQRERALASFRAGD
TKVLVATDVAARGLDIPEVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCAPAEIG
ELRAIEKAMKAKIAVVGGEEPFEAAKIRERGGPAGRPAQGAARKRPARRPSRAPKTAQRA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgatacgcgggcgacctggccgaaagacgacatgaccaacgagaccacccgc
ccgaaccgttcgggcaatccccgcgcccagcaaggcggcaagccgcgcttccgcaacgac
aagcccaacaccaaccaccgccgtcaccgcgccgagccggaagagaaattcatccgccgc
gccattccggatatcgacaccgccttcacccgcatggggatcgatgcgcgcgtggcgatc
aacctgccgggcctgggcatcgagaccccctcgcccatccaggaaaaatccatccccggc
atcgtcgccggccgcgacctcctgggcctggcccagaccggcaccggcaagacggcggcc
ttcggcctgccgatgctgacccggctgctgaacatcggccgcaagcccgagccccggacc
tgccgggcgctgatcctggcgccgacccgcgaactggcgacccagatcgccgagaacatc
gacaattatgccatcggcacgccgatccggcagttccgcgtcgtcggcggcgcctcgatc
aacgtgcaggtccagcggctggaacgcggcgtcgacgtgctgatcgcgacgccgggccgg
ctgatcgacctgatcgagcgcggcgccatcgacctgtcgcagaccaagtatctggtgctg
gacgaggccgaccagatgctggacatcggcttcatccacgcgctgcgccgcatcgccaag
atgctgccgcgcgagcgccagacgctgctgttctcggccaccatgccgaagctgatggag
gagctggccgacagctacctgaacgatccgctgcgcgtggcggtgaacccgcccggccag
gcggcagccaagatcgaccagggcgtgcatttcgtcaaccagggcgacaaggcgacgctg
ctggcggaatacctgtccaaacatgtggacgagctggccatcgtcttcggccgcaccaag
cacggctcggaaaagctgtcgaagcttttggagaaatggggctacaaggtcgccgcgatc
cacggcaacaagagccagggccagcgcgagcgtgccctggccagcttccgcgccggcgac
accaaggttctggtcgcgaccgacgtggcggcgcgcggcctcgacattcccgaggtggcg
catgtctataactacgacctgcccaacgtgccggaaaactacgtccaccgcatcggccgc
accgcccgcgccgggcgcgacggccgcgccatcgccttctgcgcgcccgccgagatcggc
gagctgcgcgccatcgagaaggcgatgaaggccaagatcgccgtggtcggcggcgaggag
cccttcgaggcggccaagatccgcgaacgcggcggccccgcgggccgcccggcgcaaggc
gcggcgcgcaagcgcccggcccggcgcccctcgcgcgcgccgaaaacggcgcagcgggcc
tga
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