Pectobacterium parmentieri RNS08.42.1A: A8F97_04710
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Entry
A8F97_04710 CDS
T04513
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppar
Pectobacterium parmentieri RNS08.42.1A
Pathway
ppar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8F97_04710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_04710
Enzymes [BR:
ppar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8F97_04710
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A8F97_04710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOR58206
UniProt:
A0A8B3FL94
LinkDB
All DBs
Position
complement(1060493..1063942)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPENYRYSLPPKAGEQRLLGELTGAACAVECAEIVERHAGLVVLIAPDMQNALRLRDEIQ
QFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCPH
SFLHGHALVLKKSQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEPY
RIDFFDDEIDSLRLFDVDTQRTLNEVPHINLLPAHEFPTDKTAIELFRSQWREQFEVRRD
AEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLIVNTGNIEQSAERFWQDIQ
QRFESRRVDPMRPLLSSDSLWLRVDGLFTELKAWPRVQLRTDTLPEKAANVNLAYLPLPD
LAVQHQQKSPLDALRRFIEQFDGQIVFSVESEGRRETLQELLARIKLNPKLINTLEQAQG
RGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYVGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENA
PLHKLGGEAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHDKTQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQILEETQEGKVDILIGTHKLLQSDVRW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLMVREAILRETLRGGQVYYLYNDVENIEKATQRLAELVPEARITI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DDQSGQMTSVGFSLYMELLESAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPDV
NTRLSLYKRIASAKNTVELDELKVELIDRFGLLPDASRHLLQIAALRQQAQALGIRRIEG
NEKGGFIEFGEQNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFVGTLLG
NMAQHTLAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattaccgttattcgttgccacccaaagcgggcgaacagcgcctgttgggc
gagttaaccggcgcggcctgcgccgttgaatgtgcagagatcgttgaacgccacgccggg
ctggtggtgcttatcgcgcccgatatgcaaaacgccctgcgattgcgtgatgaaattcag
caatttaccgaccagcacgtcaccacgctgcctgactgggaaacgctgccctacgatagc
ttttctccgcatcaggaaattatttcaactcgcctttccacgctctatcaattgcccaac
atgacacgcggcgttctgattctgccggtcaacacgctgatgcaacgcgtttgtccgcac
agtttcctgcacggccacgcgctggtgttgaaaaaaagccagcgcctctcgcgcgataag
ctgcgttcgcagttggaacaagcgggctaccgtagtgtcgatcaggtgatggagcacggc
gaatatgcgacgcgcggcgcgctgctggatctattcccaatggggagtgaagagccctat
cgcatcgatttctttgatgacgagatcgacagcctgcgcttgtttgatgtggacacgcag
cgaacgctgaatgaagtaccacacatcaatctgctgcccgcgcatgaattcccgaccgac
aaaactgcaatcgagcttttccgcagccagtggcgtgaacagttcgaggtacgacgcgat
gccgagcacatttatcaacaggtcagcaaaggcgtctggcccgcagggatcgaatactgg
cagccactattcttcagtgagccgctgccgtcgctattcagttacttcccgaacaacacg
ctgatcgtcaacacgggtaatattgaacagagcgctgagcgcttctggcaggatattcag
cagcgctttgaaagtcgccgtgtcgaccccatgcgcccgctgttgtcgtcggattccctc
tggctacgcgtcgatgggttgttcaccgagctgaaagcgtggccacgtgtacagttaaga
accgatacgttgccggaaaaagccgccaacgtaaatctggcctatctgccgctgccggat
ctggcggttcaacaccagcagaaatcgccgctggatgcactacgccgttttatcgaacag
ttcgacggccagatcgttttctctgttgagagcgaaggtcgccgcgaaacgctacaagag
ctgctggctcgcatcaagctgaaccctaagctcatcaacacgctagagcaggcacaggga
cgtggcacttatctgatcattggtgccagcgaacacggctttatcgacaccctgcgtcag
cgcgccttaatctgcgaaagcgatctgctgggtgaacgcgtcagccgtcgccgtcaggat
agtcgccgcacgattaataccgatacgctgatccgcaatctggcagaactgcgtccgggg
cagcccgtcgttcacctcgaacacggcgttggccgctatgtggggctaaccacgctggaa
gccggtggcatcaaagccgagtacctgattttgacctatgcgggtgaagacaagctgtac
gtcccggtttcttcgctgcacttgattagccgctacgcgggcggtgccgatgagaatgca
ccgctgcacaaattgggtggcgaggcgtggtcgcgtgcgcggcaaaaagcggcggaaaga
gtgcgtgatgtcgccgccgagctactggatatttatgcccagcgcgcggcgaagagcggc
tttgcctttaagcatgacaaaacgcagtaccagcttttctgcgaaagtttccctttcgaa
actacgcccgatcaggcccaggccatcaacgccgtgctgagcgacatgtgccagccgctg
gcgatggatcgtttggtgtgtggcgatgtcggctttggtaaaaccgaagtggcaatgcgc
gccgcgtttttagcggttgaaaaccataagcaggttgccgttctggtgccgacgacgctg
ttagcgcagcagcattttgacaacttccgcgatcgctttgccaactggccggtgaagatt
gagatgatctcccgcttccgcagcgcgcgtgaacaaacccagattcttgaggaaacgcag
gaaggcaaagtcgatattctgatcggcacccacaaattgttacagagcgacgtgcgctgg
cgcgatttagggctactgattgtcgacgaagaacaccgcttcggcgtgcgtcacaaagag
cgcatcaaagcgatgcgagcggatgtagatatcctgacgctgaccgctacaccgattcca
cgaacgctcaacatggcaatgagcggcatgcgcgatctgtcgattattgccacgcccccc
gcccgtcgtctggcggtgaaaacgttcgtgcgagaatatgacaatctgatggtgcgtgaa
gccattctgcgtgaaacgctgcgcggtgggcaggtgtactacctctataacgacgtcgaa
aatatcgagaaagccactcaacggttggcggaactggtgccagaagcacgcattactatc
ggccacggccagatgcgtgaacgtgagttagaacgggtgatgaacgacttccatcaccag
cgttttaacgtgctggtatgtactaccatcatcgaaaccgggatcgacataccgagcgcc
aacaccatcatcattgagcgcgccgatcacttcggtctggcacagttgcaccaactgcgt
ggtcgcgtggggcgttctcaccatcaggcttatgcctatctgctgacgccgcctcctaaa
gcgatgagcaccgacgcacagaaacgtctggaagcgatcgcctcattggaagacctcggt
gcaggctttgcgctggcaacgcacgatctggaaattcgcggcgcgggcgaactgctcggg
gacgatcagagcggacagatgaccagcgtcggtttctcactgtacatggaactgttggaa
agcgccgtagacgctctgaaagccggtcgggagccgtcactggaagatctgatcaatagc
cagaccgacgtcgaactacggttgcccgccctgctgcccgacgatttcatccccgacgtc
aatacgcgcctgtcgctatacaaacgaattgccagtgcgaaaaatactgtcgaactggat
gagctgaaagtagagctgatcgatcgcttcggcctccttcctgatgcaagccgacatctg
ttgcagatcgccgccttgcgccagcaggcgcaagcgttgggtatccgccgtattgaaggc
aatgagaaaggcggtttcatcgaattcggcgagcaaaatcgcgtcgatccgtctcatctc
atcggcctgttgcagcgcgatccgggcacctatcgtctggatggtccgactcgcctgaaa
tttatgaaggatttaagtgaccgtccacagcgcatcgagtttgtcggtacactgctgggg
aacatggcacagcatacgctagcagcctaa
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