Pseudomonas putida BIRD-1: PPUBIRD1_1587
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Entry
PPUBIRD1_1587 CDS
T01975
Symbol
dnaX
Name
(GenBank) DnaX
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03030
DNA replication
ppb03430
Mismatch repair
ppb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPUBIRD1_1587 (dnaX)
03430 Mismatch repair
PPUBIRD1_1587 (dnaX)
03440 Homologous recombination
PPUBIRD1_1587 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppb03032
]
PPUBIRD1_1587 (dnaX)
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_1587 (dnaX)
Enzymes [BR:
ppb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPUBIRD1_1587 (dnaX)
DNA replication proteins [BR:
ppb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPUBIRD1_1587 (dnaX)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPUBIRD1_1587 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
RuvB_N
AAA_5
AAA_22
ResIII
AAA_14
TIP49
AAA_30
AAA_19
PIF1
AAA_16
AAA_18
AAA_2
TsaE
nSTAND3
AAA_7
HasA
SKI
Rad17
Herpes_Helicase
zf-CXXC
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ADR59257
LinkDB
All DBs
Position
1771445..1773514
Genome browser
AA seq
689 aa
AA seq
DB search
MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF
KVYLIDEVHMLSTHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMSP
ERVVEHLSHVLAAENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM
LGSLDHGQVYGVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEMLNVLHRVAIAQALPE
AVDNGQGDRERVLALASALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP
ADTDDAPKPVLKPTGISQATADPAGQVAAAAPVALSSPVAAVPAQPVAQAPQLEVPAPAT
ADHEPEAEADVELKAEAEAISVPEPVAEVVDLPWEEPAVAPAPLAAEPAPEPAPAPEPVA
PVAPTRAAPAHDEPPFDPSAYAAVGMERDDEPPLDEDYYGGESDPAGFSYLDELAEHVQE
DKPAAEPLPAAKPATGLALQWLELFPQLPVSGMTGNIAANCTLIAADGDDWLLHLDPGQG
ALFNATQQRRLNEALNQHLGRTLNLRIELILPEQETPAQAAARKRAERQQDAVASIEQDP
LIQQMIKLFGAKVRQDTIEPVEALVSQGQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaggttcttgcacgaaaatggcgtccgcgctcgttccgcgaaatggtcggc
cagacccatgtgctcaaggccttgatcaatgccttggacaaccagcgcctgcaccatgcc
tacctgttcaccggtacccgcggggtgggcaagacgaccatcgcccgtattatcgccaag
tgcctgaactgtgaaaccggcatcacctccacgccctgtggcacctgttcggtgtgccgg
gaaatcgacgaaggccgtttcgtcgacctgatcgagatcgacgccgccagccgtaccaag
gtcgaggacacccgcgaactgctcgataacgtgcagtacgcccctagccgtgggcgcttc
aaggtctacctgatcgacgaagtgcacatgctctcgacccactcgttcaacgccttgctc
aagacgctggaagagccgccgccctacgtcaagttcatcctcgccaccaccgacccgcag
aagctgccggccaccatcctgtcgcgctgcctgcagttctcgttgaagaacatgagcccg
gagcgggtggtggagcacctcagccacgtactggccgccgagaacgtgccgttcgaggaa
gatgccctgtggctgctggggcgtgcggccgacggctccatgcgtgatgccatgagcctg
accgaccaggccatcgccttcggtgaaggcaaggtactggccgccgatgtacgtgccatg
ttgggtagcctcgaccatggccaggtgtatggggtcttgcaggcactgctcgaaggcgat
gccagggctttgctggaggccgtgcgtaacctggccgagcaagggccggactggtcgggc
gttctggccgaaatgctcaatgtgctgcaccgtgtagccattgcccaggcgctgcccgaa
gcggtcgataacggccagggtgatcgcgagcgggtattggcgctggcttcggcgctgccg
gccgaggatgtgcagttctattatcagatgggcctgattggccgccgtgacctgcccctc
gcaccggacccgcgcggtggcttcgagatggtgctgctgcgtatgctggcgttccgcccg
gcagacacggacgacgcaccgaagccggtgctaaagccaacggggatcagccaggccaca
gctgatcctgcagggcaggtggcagccgcggcgccggtcgcgctttcatcgcctgtcgcg
gctgtgccggcgcagcctgttgcgcaagccccgcagctggaggtgcctgcacccgcgacg
gctgatcatgagccggaggccgaggcagatgttgagctgaaggccgaagccgaggccatc
tccgtgcctgagccggtcgccgaagtggtcgacctgccgtgggaagagcctgccgttgca
cccgcgccgttagcggctgaacctgcgcctgaaccggcacctgcgcccgagcctgttgcc
ccggtggcgcccacacgggccgccccggcacacgacgagccgcctttcgacccgtctgcc
tacgctgccgtggggatggagcgcgacgatgagccgccgcttgacgaagactattacggc
ggcgagagcgatccggcaggtttcagctacctggacgaattggccgaacatgttcaggaa
gacaaaccggctgccgaaccgttgccggcagccaaaccggccaccggcctggccttgcaa
tggctggaattattcccacagttgcctgtgtccgggatgacaggcaacatcgcggcaaac
tgtacgctgattgccgccgatggcgacgactggttgctgcacctggacccgggccagggg
gcgctgttcaacgccacccagcagcggcgcctgaacgaagcgctcaaccagcacttgggg
cgcacgctgaacctgcgcatcgagctgatcctgcccgagcaggaaaccccggctcaggcg
gcagcacgcaagcgagccgagcgccagcaggacgccgtcgcgtcgatcgagcaggatccg
ttgatccagcagatgatcaagttgttcggcgccaaggtgcggcaggatactattgagcct
gtagaagccctggtcagtcagggccagtaa
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