Pseudomonas putida BIRD-1: PPUBIRD1_3506
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Entry
PPUBIRD1_3506 CDS
T01975
Symbol
mfd
Name
(GenBank) Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppb
Pseudomonas putida BIRD-1
Pathway
ppb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPUBIRD1_3506 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppb03400
]
PPUBIRD1_3506 (mfd)
Enzymes [BR:
ppb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPUBIRD1_3506 (mfd)
DNA repair and recombination proteins [BR:
ppb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PPUBIRD1_3506 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADR61099
LinkDB
All DBs
Position
3917213..3920638
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITI
APLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
AAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaacctgcccggtgccgccctcagcctt
gccatcgccgaagccgccagcagcgctggccgcttcaccctgctgctgacggccgacagc
caggccgccgaccgtctggagcaggagctgcgcttctttgccccggacctgcccgtgctg
ccgttccccgattgggaaaccctgccctacgacctgttctcgccacaccaggacatcatc
tcccagcgcatcgccagcctgtaccgcctgccggagctgagccacggcatcctcgtggta
ccgatcaccaccgccctgcaccgcctggcgcccacgcgttttctgctgggcagcagcctg
gtgctggatgtgggccagaccatcgacgtggaacagatgcgcctgcgcctggaggccagc
ggttatcgttgtgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgctg
atcgacctgttcccgatgggcagcaaactgccctaccgcatcgacctgttcgataacgag
atcgagacgctgcgcaccttcgaccccgagacccagcgctcgatcgacaaggtggattcg
gtgcgcctgctgccagcacgcgaattcccgatgcagaaggaagaagtgacccgcttcaag
gcacgctttcgcgagcgcttcgacgtcgacttccgccgcagtgcaatcttccaggacctg
gccagcggcatcatccccgccggtatcgagtactacctgccactgttcttcgaagaaacc
tcgaccctgttcgactacctgccgaccgacacccaggtgttctcgctacccggtgtggaa
caggccgccgagcacttctggaacgacgtgcgcgggcgttatgaagaccgccgcggcgac
ctcagccggccgctgttgccgccggccgagctgttcctgccggtggaagattgcttcgcc
cggctcaagcaatggccccgggtggtggtcagcagcgaagagctggagcctggcgtgggc
cgcgagcgcttcccggcgcgcgccctgcccaacctggccatcgaggccaaggccaaccag
ccgctggccgagctggccaacttcctcgaccagttccccggccgcgtactcttcaccgcc
gaatcagcaggccgccgggaagtgctgctggagctgctcgaacgtctgaagctgcgcccg
cataccgtcgaaggctgggacgacttcattaccggtgccgagcgcctggcgatcaccatc
gccccgctggacgacggcctgctgctggacgatccagggctggccctgattgccgaaagc
ccactgttcggccagcgggtgatgcagcgccggcgccgtgacaagcgcggcgaaaccgcc
aacgacgcggtcatcaagaacctcaccgagctgcgcgaaggtgcgccggtggtgcacatc
gaccatggcgtcggccgctacctgggcctggccaccctggaaatcgatggccaggccgcc
gaattcctgacgctggaatacgccgagaacgccaagctgtatgtgccggtggccaacctg
cacctgatcgcccgctacaccggcagcgacgacgccctggcaccgttgcaccggctgggt
tcggaggcctggcagaaggccaagcgcaaggccgctgaacaggtccgcgacgtggccgcc
gaactgctcgatatctatgctcgccgcgccgcgcgcaagggctacgcgtttgccgacccg
tcggccgactacgccaccttcagcgccggcttcccgttcgaggaaactccggaccagcag
gccgccatcgaggccgtgcgcgccgacatgctggcccccaagccaatggaccgcctggtc
tgcggcgacgtgggcttcggcaagaccgaagtggccatgcgcgcggcgttcatcgccgtg
cacagtggccgccaggtggccgtactggtgcccaccaccctgctcgcccagcagcattac
aacagcttccgcgaccgctttgccgactggcccgtgaccgtggaagtgatgagccgcttc
aagtcggccaaggaagtggccgccgccgctgcggaccttgccgaaggcaagatcgacatc
ctcatcggcacccacaagctgctgcaggacgacgtgcgcttcaaagacctgggcctggcc
atcatcgatgaagagcaccgctttggcgtgcgccagaaagaacagctgaaggcgctgcgc
agcgaggtcgatatcctcaccctgaccgccacgccgattccgcgcacgctgaacatggcg
gtggcgggcatgcgcgacctgtcgatcatcgccacgccgccagcacgccgcctatcggtg
cgcaccttcgtcatggaacagaacaagagcacggtcaaggaggcgctgctgcgcgaactg
ttgcgcggtggccaggtgtactacctgcacaacgatgtgaaaaccatcgaaaaatgcgcc
gccgaccttgccgagctggtgcccgaggcacgcatcggcatcggccacgggcaaatgcgc
gaacgcgagctggaacaggtgatgagcgatttctaccacaagcgtttcaacgtgctggtg
gcctcgaccattatcgaaaccggtatcgacgtgcccagcgccaacaccattgtcatcgag
cgcgccgacaagttcggcctggcccagttgcaccagctgcgtggccgggttggccgtagc
caccaccaggcctacgcctacctgctcacacctacccgtcagaaggtgagcgccgacgcc
gaaaaacgcctggaggcgatcgccaacacgcaagaccttggcgcaggctttgtgctggca
accaacgacctggaaatccgcggtgccggcgagctactgggcgaaggccagagcgggcag
atccaggcggtgggcttcaccctgtacatggaaatgctcgaacgtgcggtcaaggcaatc
cgtaaaggcacccagccgaaccttgagcaaccactgggcggcggcccggagatcaacctg
cgcctgccggcactgatccccgaggactacctgcctgacgtgcatgcgcgcctgatcctg
tacaaacgcatcgcctcggctgccgacgaagaaggcctcaaggacttgcaggtcgagatg
atcgaccgcttcggcttgctgccagagccgaccaagaacctgatgcgcctgacgtcactc
aagctgcacgcggaaaagctcggcatcaagaaagtcgatgcggggcccaacggtggcaag
ctcgagttcgaagccgaaacaccggtcgacccactgaccctgatcaagctgatccagggt
cagcccaaacgttacaagttcgaaggcgccacccagttccgcttcctggtaccgatggaa
cgccccgacgaacgtttcaataccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
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