Pseudopropionibacterium propionicum: HMPREF9154_1868
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Entry
HMPREF9154_1868 CDS
T02180
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03030
DNA replication
ppc03410
Base excision repair
ppc03420
Nucleotide excision repair
ppc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9154_1868 (ligA)
03410 Base excision repair
HMPREF9154_1868 (ligA)
03420 Nucleotide excision repair
HMPREF9154_1868 (ligA)
03430 Mismatch repair
HMPREF9154_1868 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppc03032
]
HMPREF9154_1868 (ligA)
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_1868 (ligA)
Enzymes [BR:
ppc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF9154_1868 (ligA)
DNA replication proteins [BR:
ppc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF9154_1868 (ligA)
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF9154_1868 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9154_1868 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF9154_1868 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9154_1868 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFN45089
LinkDB
All DBs
Position
complement(2030704..2032794)
Genome browser
AA seq
696 aa
AA seq
DB search
MTISPETEYRWQELNQLLLAASDAYYGGVEPIISDAEYDERLKELAGLEERHPELRRPDS
ATTRVAYARVTEFTPVTHRQRMLSLDNVFDETELAAWLARVPAEHYLCELKIDGLAVNLT
YLDGRLAQAATRGDGRVGEDITGNVATIHGIPHRLRGSNIPTVLEVRGEVFFPKQAFAEL
NEALEEAGQHRFANPRNAAAGSLRQKDPRITATRPLRMIVHGIGTHDGLSLTRQSQAYEV
LGSYGLPVSAHTRVVDSAAAARAYVTHHGEHRHDAEHEIDGVVVKVDDLAAQRRLGSTSR
APRWAIAYKYPPEEVHTRLLDIRVGVGRTGRVTPFGAMEPVLVAGSKVAMATLHNAHEVA
RKGVRIGDTVVLRKAGDVIPEIVAPVVSLRDGNEREFVMATHCPACGTALAQQKEGDKDL
RCPNARSCPSQLRERLYSLAARGAFDIEALGEVGARDLLESGLLTDESGLFALTEEDLAR
SSIYATRRGITANGLKLLENLAAAKQQPLWRVLVALSIRHVGPTAARALASRFGSMSEIR
AASVDELADTEGVGPVIAQSLKLWFEVDWHADIVEAWTAAGVRMADELPGPGNDDRPSAT
LEGLTVVVTGSLEGFTRDGAKEAIVSRGGKAAGSVSRKTNYVVVGENAGSKATKAEELGL
PILDEAGFLILLEKGPAGLSDGGDAATSVPGSPGDE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttcccccgaaacagaataccgctggcaggaactcaaccagcttctcctggcc
gccagcgacgcctactacgggggagtcgagcccatcatctccgacgccgagtacgacgaa
cggctcaaggaactcgcgggcctggaggaacgccatcccgagctgcgacgcccggactcc
gccacaacgcgggtggcctacgcgcgcgtcaccgagttcacccccgtcacccaccggcag
cggatgctgagcctcgacaacgtcttcgacgagaccgaactggccgcctggctggcccgg
gtgcccgccgagcactacctgtgcgaactgaagatcgacgggctggcggtgaacctcacc
tatctcgacgggcgcctcgcgcaggctgccacccggggggacggacgggtgggggaggac
atcaccggaaacgtcgccaccatccacggcatcccgcaccggctgcgaggaagcaacatt
cccaccgtgctggaggtgcgaggcgaggtgttcttccccaaacaggccttcgcggaactg
aacgaggccctggaggaggccgggcagcaccggttcgccaacccccgcaacgccgccgcc
gggtcgctcaggcagaaagaccccaggatcaccgccaccaggcccctgcggatgatcgtc
cacggcataggaacccacgacggcctctccctgacccgccagagccaggcctacgaggtg
ctgggctcctacgggctgccggtatcggcccacacccgggtggtcgactcggccgccgcg
gcccgggcctacgtcacccaccacggcgagcaccgccacgacgccgaacacgagatcgac
ggggtcgtggtcaaggtcgacgacctggccgcccagcgccggctgggatccacatcccgg
gcgccgcgctgggcgatcgcctacaagtacccgcccgaggaggtccacacccggctcctc
gacatccgtgtcggggtcgggcgcaccgggcgcgtcaccccgttcggggcgatggaaccg
gtgctggtcgcgggatccaaggtcgccatggccactctccacaacgcccacgaggtggcg
cgcaagggggtgcggatcggggacacggtggtgctccgcaaggccggtgacgtgattccc
gagatcgtcgcccccgtcgtctcgctgcgcgacggcaacgaacgcgaattcgtgatggcc
acccactgcccggcctgcggcaccgccctggcgcagcagaaggagggcgacaaggacctg
cgctgcccgaacgcccgcagctgtcccagtcagctcagggaacgcctctactcgctggcc
gcccgcggggccttcgacatcgaggcgctgggcgaggtgggcgcccgcgacctcctggaa
tccggtttgctgaccgacgagtcgggtctgttcgcgctcaccgaggaggacctggcccgc
agctccatctacgccacccggcggggaatcaccgccaacgggctgaaactgctggaaaac
ctggctgccgccaagcagcaaccgctgtggcgggtgctggtggcgttgtccatccgccac
gtcggccccaccgcggcccgcgcgctcgcgtcccgtttcggaagcatgtccgagatccgt
gccgcctccgtcgatgaactggccgacaccgagggcgtgggcccggtgatcgcccagtcg
ctgaagctgtggttcgaggtggactggcacgccgacatcgtcgaagcctggaccgccgcc
ggggtccggatggccgatgaactccccggaccgggcaacgacgaccggccctccgccacc
ctcgaggggttgaccgtggtcgtcacgggaagcctcgagggattcacccgcgacggggcc
aaggaagccatcgtctcccggggcggcaaggccgccgggtcggtgagccggaaaaccaac
tacgtggtggtgggggagaacgccggcagcaaagccaccaaggcggaggaactggggctg
cccatcctcgacgaggcgggattcctgatcctcctggagaaaggacccgcggggctcagc
gacggcggcgacgcggcaacatctgtgcccggatcgcccggtgacgagtga
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