Pseudomonas pergaminensis: KUA23_07930
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Entry
KUA23_07930 CDS
T08563
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUA23_07930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_07930 (mfd)
Enzymes [BR:
ppeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUA23_07930 (mfd)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KUA23_07930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USW02638
LinkDB
All DBs
Position
complement(1755906..1759355)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRISSLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDTGVGRERFPAGTLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQSTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcatttccccgattgggaaaccctgccctacgacctg
ttctcgccacaccaggacatcatctcccagcgcatctccagtctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgatgtggagcag
atgcgcacgcgcctggaagccagtggctaccgttgcgtcgacaccgtgtacgagcacggc
gagtttgccgtgcgcggtgcgctgatcgacctgttcccaatgggcagcaaattgccgtat
cgcatcgacctgttcgatgacgaaatcgagacgctgcgcaccttcgatccggaaaaccag
cgctccatcgacaaggtggactcggtcaagctgctgcctgcgcgggaattcccgctgcaa
aaagacgcggtcacccgcttcaaggcgcgcttccgtgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacctgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccactctgtttgactacctgccccaggacacccaa
gtgttctcgctaccgggtatcgagcaagcggcggagaacttctggaacgacgtgcgtaac
cgttatgaagaacgccgcgtcgacccatcccgtcctctattgccgcccgccgaactgttc
ctgccggtggaagactgcttcgcacgcctgaaaaactggccgcgcgtggtcgccagccag
caggatgtcgacaccggtgtcggccgcgaacgcttccccgcgggcacactgcccgacctg
gcgatccaggccaaagccacgcaaccgctggaagcgctatccaacttcctcggcgacttc
ccaggccgcgtgctgtttaccgccgagtcggccggccgccgcgaggtgctgctggagctg
ctggagcgcctgaagctgcgaccgaaaaccgtcgacagttggccggatttcgtcaagagc
aaagagcgcctggcaatcaccatcgcgccgctcgatgaaggcctgttgctggatgatccc
gccctggcgctgatcgccgagagcccgctgttcggccagcgcgtgatgcaacgtcgccgc
cgcgaaaaacgcgccgacgccaacaacgacgccgtgatcaagaacctcaccgagctgcgt
gaaggcgcgccggtggtgcacatcgatcacggcgtcggccgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccagcctgcacctgatcgcgcgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcctgggttccgagacctggcagaaagccaagcgcaaagccgcc
gagcaggtgcgcgacgtcgccgccgaattgctcgacatctatgcacgtcgcgccgcccgt
gagggttacgccttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaagcactatcgaagcggtgcgtgccgacatgctcgcg
cccaagccgatggatcgcctggtgtgcggcgacgtgggcttcggcaagaccgaagtggcg
atgcgcgccgcctttattgcggtgcacggcggcaagcaagtcgcgatcctggtgcctact
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccagtg
accgtggaagtcatgagccgcttcaagtccgccaaggaagtgaatgccgccatcgccgat
ttggccgaaggcaagatcgatatcgtcatcggcacgcacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgctttggtgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctcaccctcaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcacgccgtttgtcggtgcgcacgtttgtgatggagcagaacaaaagcacggtc
aaggaagcactgctgcgcgaattgctgcgcggcggccaggtgtattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcgtatc
gccatcggccatgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgattgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagctgcaccag
ttgcgcggccgggtcgggcgcagtcaccaccaagcgtacgcctacctgctgacgccgccg
cgccagcagatcacctccgacgcggaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgcgggctttgtgctcgccaccaatgacctggaaatccgtggtgccggcgagctg
ctgggcgacggccagagcgggcagatccaggcggtgggtttcacgctgtatatggagatg
cttgagcgcgcggtgaaagccatccgcaaaggcgagcagccgaacctcgatcaaccgctg
ggcggcgggccagaaatcaatctgcgcttgcccgcgttgattcccgaggattacctgccc
gacgtgcatgcgcgactgatcctgtacaaacgcatcgcctcggccaccgatgaggaaggc
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgtctgaccctgctcaaattgcaggccgagcagttgggcatcaagaaggtc
gacgccgggccgcaaggtgggcgcatcgagttcgaagcgcagacaccggtggacccattg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgctttaatacattggaggcgttg
ttcgagcgcctcatcccgaaatctgcttga
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