Pseudomonas pergaminensis: KUA23_13605
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Entry
KUA23_13605 CDS
T08563
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppeg
Pseudomonas pergaminensis
Pathway
ppeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KUA23_13605 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeg03400
]
KUA23_13605 (ligD)
Enzymes [BR:
ppeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KUA23_13605 (ligD)
DNA repair and recombination proteins [BR:
ppeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KUA23_13605 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Rbx_binding
Motif
Other DBs
NCBI-ProteinID:
USW03662
LinkDB
All DBs
Position
complement(3025542..3028028)
Genome browser
AA seq
828 aa
AA seq
DB search
MPKPLSEYNRKRDFGVTGEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLS
WAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGVWQPHDDPRK
AYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKEQWLLIKEKDPQARPADDYDIVQAQPN
SVVSNASVGAPKAKPPAKTKAKPKKAATSALPEQFAPQLATLVDRAPEGDWHYEIKFDGY
RMLARIRDGDVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQAL
QNAFDIGRSLDIVYYLFDAPFLNGQDQRQAPVEDRRAALKAALAGSRSKLLRFSEAFTAH
HRDIFESACDLSLEGVIGKRLGSPYVSSRSADWIKLKCRLRQEFVIVGYTRPQGSRSGFG
ALLLAVNDKTGLVYAGRVGTGFDQAALKAIYAQLTPLERKASPLEKPLTSAQARGVHWVE
PTLVGEVQFAEWTREGVVRQAAFVAMRTDKPAAQIIHEQPRTAKSMKPAKKPSAGVNITH
PDRVIDSQSGTQKQQLAQFYAGISRWILPFLHHRPVSLLRAPEGIDGEQFFQKHSERLAI
PNIKQLDQALDPGHARLMEIDSVKALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPD
PALPWKAMLEAAQLTLSVLDEIGLQAFVKTSGGKGLHLVVPLARRDSWDTVKAFAKAIAQ
FMTAQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREELK
GLRSAQQWTVANLQQRLDGLKADPWDGYANRQKIGKKMWEKLGAHSPE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagccccttagcgagtacaaccgcaagcgcgacttcggcgttaccggcgagccg
gcaggcagtgcgcccgccggcaagcgcaaagcatcggcgctgtcctttgtgatccagaaa
catgacgcgcgcaacctgcactatgactttcgcctggaactcgatggcgtgttgctcagt
tgggcggtgcctaaaggcccgagcctggacccgtcgcagaagcgcctggccgtacacgtg
gaggatcaccccctcagctacggcagcttcgaaggcagtattccggccggccaatatggc
gcgggcgatgtcatcgtgtgggaccgtggcgtatggcaaccccatgacgacccgcgcaag
gcctacgccgctggaaaactcaaattcaccttggtcggtgagaaactttccggcgactgg
acactggtgcgcacccgccttaaaggcagcggcgacaaggagcagtggctgctgatcaag
gagaaagacccgcaggcacgcccggccgacgattatgatatcgtccaggcccagccgaac
agcgtggtcagcaacgcgtcggtcggcgcgcccaaagccaagcccccggcgaaaaccaag
gccaagcccaaaaaagccgcgacgtccgccctccctgagcaattcgcaccgcagttggcc
acgctggtggaccgcgcccccgaaggcgactggcactacgagatcaagttcgacggctac
cgtatgctcgcacgcatacgcgatggcgacgtgcgcctgttcacccgcaacggccatgac
tggaccgaacgcctgccgcgccaggccaaggccctgcaagccctgaagctcaaggacagt
tggctcgacggcgaggtggtcagcctcaacggcgacggcctgccggacttccaggcgctg
caaaatgcttttgatatcggccgcagcctggacattgtctattacctgttcgatgcgccc
ttcctcaatggccaggatcagcgccaggcaccggtcgaagatcgccgtgcggcactcaag
gcagcgttggcgggcagcagaagcaagctattgcggttctcggaagcgttcaccgcccac
catcgcgatatttttgaaagtgcctgtgacctatccctggaaggcgtgattggcaagcgc
ctgggcagcccttacgtgtccagtcgcagcgccgattggatcaagctcaaatgccgcctg
cgccaggagttcgtgatcgtcggctacacgcggccgcagggttcgcgcagtggtttcggg
gcgctattactggcggtgaacgacaagacagggctggtgtatgccgggcgtgtgggcacg
ggctttgatcaagcggcgctgaaagccatctatgcgcaactcacgccgctggagcgcaag
gcatcgcccctggaaaaaccattgaccagcgcccaggcccgtggtgtgcactgggtggag
ccgaccttggtcggcgaggtgcaatttgccgaatggacccgcgaaggcgtggtgcgccag
gcggcattcgtggcgatgcgtaccgacaaacccgcagcccagatcattcatgagcaaccg
cgtacggccaaatccatgaaacccgcaaaaaaacccagcgccggggtgaacatcacacac
cccgatcgtgtgatcgactcgcaaagcggcacgcagaagcagcaactggcgcagttctac
gcggggatcagccgatggatcctgcccttcctgcaccaccgcccggtttcattgctcagg
gcgcctgaaggcatcgacggcgagcagttcttccagaaacactctgagcgtctggccatt
cccaatatcaagcaactggatcaggccctcgacccagggcatgcgcgcctgatggaaatc
gacagcgtcaaggcgttgatcggggccgtgcagatgggctccgtggagtttcacacctgg
ggcgccacctcggacaagatcgaaacccctgacttgtttgtgctcgatctcgacccggac
ccggcgctgccgtggaaagccatgctcgaagcggcgcaattgaccctctcggtattggat
gaaataggcctgcaagccttcgtcaagaccagcggcggcaagggcttgcacctggtcgtg
ccactggcgcgccgagacagctgggacaccgtcaaggccttcgccaaggccatcgcccag
ttcatgaccgcacaattaccggagcgttttaccgcgacctcaggccccaagaaccgggtc
ggcaagatattcatcgactatttgcgtaatgcgcggggtgccagcacggtggccgcgtat
tcggtacgggcgcggccgggcttgccggtctcggtgccgatcagtcgtgaggaattgaag
gggttacgcagtgcacagcagtggacagtcgccaatctgcagcagcggttggacggcctg
aaggctgatccttgggacggctacgccaatcgacagaaaatcggcaagaagatgtgggaa
aaactgggcgcccattcaccggagtga
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