Pseudonocardia petroleophila: H6H00_04235
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Entry
H6H00_04235 CDS
T08626
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppel
Pseudonocardia petroleophila
Pathway
ppel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H6H00_04235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppel03400
]
H6H00_04235 (mfd)
Enzymes [BR:
ppel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H6H00_04235 (mfd)
DNA repair and recombination proteins [BR:
ppel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H6H00_04235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNG53219
UniProt:
A0A7G7MKA8
LinkDB
All DBs
Position
complement(853782..857342)
Genome browser
AA seq
1186 aa
AA seq
DB search
MAKLAGLLRTVLADSDIRAVLDAARDTRADTGPDGGPALRVEGPAALRPFLAAGFGEAGR
TVLAVTATDREAEDLGAALADLVDADAVAVLPSWETLPHERLSPRPDTVGRRLSIFRRLA
DPDTAPRVLVTAARSLIQPIAPGLGRLEPVSLRVGDTADFDALLERLVELAYTRVEMVTA
RGEFAVRGGIVDVFPPTADQPLRVEFWGDEVSELRTFSVADQRSVAPVDVLHAPGCRELL
LTAPVRERAAALARAHENNPPLRELLDHLANGIPSEGMESLVPVLTGGELELLTDLLPAT
ALVLVADPERVRTRSADLVRTGQEFLEASWFAASSGADAPIDVGASAYRDLNDVLHHAAA
TGHPVVTFSPLLSGRDDALAPPVHEVESYRGDTDRALVDLRAHVSSGGTAVLVVGGAGTA
QRSLEQLREADVPATLVDELTDDPEKGLVTVTCGRLNQGFTAGPLVLLSEADLTGNRAAA
TAPTKMPSKRRNTVDLVTLKPGDHVVHSQHGIGRFVEMRERTVGGATREYLVLEYASSKR
GQPADRLFVPTDALDEISRYVGGEIPTLNKLGGGDWAKTKGRARKAVRQIAAQLVQLYAA
RQSAPGHAFAKDTPWQREMEDAFPYTETPDQLAAIDEVKADMERPVPMDRVISGDVGFGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLATQHLDTFTERMRAFPVTVRGLSRFTDNAEAKE
TITGLTDGTVDVVVGTHRLLQSSVRWKDLGLVIVDEEQRFGVEHKEHITALRTHVDVLTL
SATPIPRTLEMSLAGIREMSTITTPPEDRHPTLTYVGAYDTKQVAAAIRRELLRDGQVFY
VHNRVSTIDRAAKTIRDLVPEARIAVAHGQMNEDLLERTVNGFWHNEFDVLVCTTIVENG
LDISNANTLIVERSDTLGLSQLHQLRGRVGRGRERGYAYFLFPPEHPLTETAHDRLATIA
QHSELGAGAAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYIRLVGEAVAAFRQQAGAGE
GEEEEQLTDVRVDLPIDAHVPHDYVTGERLRLEVYRKIAEAGDAEALERIVEELTDRYGE
PPQPVRNLLAVAEFRQKCRRLGIAEVAVAGNGIRVGPVDLPDSGQLRLNRLYPKSQYKAA
ARAVVVPKPVAGGRIGGAPLRDVELLEWCTRLVHDLVLPTAAPAAG
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagctcgccggtctcctccgcaccgtcctcgccgactccgacatccgggccgtc
ctcgacgcggcccgcgacacccgggccgacaccggccccgacgggggtccggccctgcgc
gtcgagggcccggccgcgctgcgcccgttcctcgcggcagggttcggcgaggcgggccgc
accgtcctggccgtcaccgccaccgaccgcgaggccgaggacctgggtgccgcgctcgcc
gacctggtcgacgccgacgccgtcgcggtgctgccgagctgggagacgctgccgcacgag
cgcctctcgccgcgccccgacaccgtcggccgccgcctgtcgatcttccgcaggctcgcc
gacccggacaccgcgccccgggtgctggtcaccgcggcccgcagcctgatccagccgatc
gcgccgggcctgggccgcctggagccggtgtcgctgcgggtcggcgacaccgccgacttc
gacgccctgctggagcgcctggtcgagctggcctacacgcgcgtcgagatggtcaccgcg
cgcggcgagttcgccgtccgcggcgggatcgtcgacgtcttccccccgacggccgaccag
ccgctgcgcgtcgagttctggggcgacgaggtgagcgagctgcgcacgttctccgtcgcc
gaccagcgctcggtcgcccccgtcgacgtcctgcacgccccgggctgccgggagctgctg
ctcaccgccccggtgcgcgagcgggccgccgcactcgcgcgggcgcacgagaacaacccc
ccgctgcgcgagctgctcgaccacctggccaacggcatcccgtccgagggcatggagtcg
ctcgtcccggtgctgaccggcggcgagctggagctgctcaccgacctgctgcccgccacg
gcgctcgtcctcgtcgccgacccggagcgcgtccgcacccgcagcgccgacctcgtccgc
accgggcaggagttcctggaggcgtcctggttcgccgcctccagcggcgccgacgccccg
atcgacgtgggcgcctcggcctaccgcgacctgaacgacgtgctgcaccacgccgccgcc
accggccacccggtcgtcacgttcagcccgctgctctcgggccgcgacgacgcgctcgcc
ccgcccgtccacgaggtggagtcctaccgcggcgacaccgaccgcgccctcgtcgacctg
cgcgcgcacgtctcctccggcggcaccgccgtgctcgtcgtcggcggcgccggtaccgcg
cagcgcagcctggagcagctccgggaggccgacgtcccggccacgctggtcgacgagctg
accgacgacccggagaaggggctcgtcaccgtcacctgcgggcggctgaaccagggcttc
accgcgggcccgctcgtcctgctgtcggaggccgacctcaccggcaaccgcgccgccgcc
acggccccgacgaagatgccgagcaagcgccgcaacaccgtcgacctggtcactctcaag
ccgggcgaccacgtcgtgcactcccagcacggcatcggcaggttcgtggagatgcgggag
cgcaccgtcggcggggccacccgggagtacctggtgctggagtacgcgtcgagcaagcgg
gggcagcccgccgaccggctgttcgtgcccaccgacgcgctcgacgagatcagccgctac
gtcggcggcgagatccccacgctcaacaagctcggcggcggcgactgggcgaagacgaag
ggccgcgcgcgcaaggccgtccgccagatcgcggcgcagctcgtgcagctctacgcggcg
cgccagtccgcgcccggccacgcgttcgcgaaggacacgccgtggcagcgcgagatggag
gacgccttcccctacaccgagacgcccgaccagctggcggcgatcgacgaggtgaaggcc
gacatggagcgccccgtcccgatggaccgcgtgatctccggcgacgtcgggttcggcaag
accgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtc
ctcgtcccgacgacgctgctcgccacccagcacctcgacaccttcaccgagcggatgcgc
gcgttccccgtcaccgtgcgcgggctgtcccggttcaccgacaacgccgaggccaaggag
acgatcaccggtctcaccgacggcaccgtcgacgtcgtggtcggcacccaccggctgctg
cagagcagcgtgcggtggaaggacctcgggctcgtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcacatcaccgccctgcgcacgcacgtcgacgtgctgacgctg
agcgccacgccgatcccgcgcaccctggagatgagcctggccggcatccgcgagatgtcg
acgatcacgaccccgcccgaggaccgccaccccacgctcacctacgtcggcgcctacgac
accaagcaggtcgccgccgcgatccgccgcgagctgctgcgcgacgggcaggtgttctac
gtgcacaaccgcgtgtccacgatcgacagggcggccaagacgatccgcgacctcgtcccg
gaggcccggatcgcggtggcgcacgggcagatgaacgaggacctgctcgaacgcaccgtc
aacggcttctggcacaacgagttcgacgtgctggtctgcaccacgatcgtcgagaacggc
ctcgacatctccaacgccaacaccctcatcgtcgagcgctccgacaccctcggactctcg
cagctccaccagctccgcggccgcgtcggccgggggcgcgagcgcgggtacgcctacttc
ctgttccccccggagcacccgctgaccgagaccgcgcacgaccggctcgccacgatcgcc
cagcactccgagctcggggcgggcgcggccgtcgcgatgaaggacctggagatccgcggc
gcgggcaacatcctcggcgccgagcagagcgggcacatcgcgggcgtcgggttcgacctc
tacatccggctcgtcggcgaggccgtcgcggcgttccggcagcaggcgggcgcgggggag
ggcgaggaggaggagcagctcaccgacgtgcgcgtcgacctgccgatcgacgcccacgtg
ccgcacgactacgtcaccggcgagcggctgcgcctggaggtctaccgcaagatcgccgag
gcgggtgacgccgaggcgctggagcggatcgtcgaggagctgaccgaccgctacggcgag
ccgccgcagccggtgcgcaacctgctcgccgtcgcggagttccggcagaagtgccgccgg
ctcgggatcgccgaggtcgcggtggcgggcaacgggatccgcgtcggtccggtcgacctg
cccgactccggccagctgcggctgaaccggctctacccgaagtcgcagtacaaggcggcc
gcgcgggcggtcgtggtcccgaagccggtggccggcgggcggatcgggggagccccgctg
cgcgacgtcgagctgctggagtggtgcacgcgcctggtccacgacctggtcctgccgacg
gcggcgcccgccgcggggtaa
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