Paenibacillus peoriae: ABE82_06100
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Entry
ABE82_06100 CDS
T04053
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppeo
Paenibacillus peoriae
Pathway
ppeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABE82_06100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppeo03400
]
ABE82_06100
Enzymes [BR:
ppeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABE82_06100
DNA repair and recombination proteins [BR:
ppeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABE82_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ALA41123
UniProt:
A0A0K2F5F5
LinkDB
All DBs
Position
complement(1446778..1447680)
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AA seq
300 aa
AA seq
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MGQAVKGTITIEGQEIPITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHHRLLTVIR
WPHGIHGDFFYQKNAPRPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHEA
GSKLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQVGDLIDKVPPQPVEDVLKHMRTNAHRT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctgttaaaggtactattaccattgaaggtcaggaaattcctatcacaaac
ccggataaaccgctgtggcctgaagcaggcgtgactaaggcgctatatcttcgcaagctc
gcggtattggctcccttcctgctcaaatattgccatcatcgcctactgaccgtcatccgc
tggccacatgggattcacggtgattttttttatcagaaaaatgccccacgtcctcggccg
gactatattgaaaccgctctgcatgatggtattgaatatatcgtgctcggcaaattgcca
caacttctctggcttggtaatcaagctgcgttggaattccacccctctctgcatgaagcg
ggaagcaagctgccctgtgaatggatgattgaccttgatccatccagagaggtggagcca
cgtattatggaggcagcctctattgtcggtgaagtactggcttcgcttggtttggattcc
gtccccaaaacttccggggccacaggtgtacaaattatcgttccgatccgtacaggcata
accttcgacgaacttcgcagcatcgggctattagttggacagtttgtgacagaaaagcac
ccgcatctgttcacactcgaacggttaaagaaggatcggggaacagccatctattttgat
tatttgcagcattatcaggggaaaactctggccgctccttataccccgcgggcacgcccc
ggcgctacggtctccactccgctaacatgggaagaggtacggcaagatgtatcaccactt
gactaccatttgctgaatattgaagaacgactaaaccaggtaggtgacttgatcgacaag
gttcctccccagcccgtagaagacgtcctcaagcatatgcgcaccaatgcacaccgaacc
tga
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