Prunus persica (peach): 18792228
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Entry
18792228 CDS
T03092
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pper
Prunus persica (peach)
Pathway
pper03013
Nucleocytoplasmic transport
pper03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18792228
03015 mRNA surveillance pathway
18792228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pper03019
]
18792228
Messenger RNA biogenesis [BR:
pper03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18792228
mRNA cycle factors
P-body specific factors
18792228
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
18792228
NCBI-ProteinID:
XP_020409745
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Position
G1:44954358..44963511
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AA seq
528 aa
AA seq
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MKDPLVRTKVLVRHLPPSLSHSDLLQQIDHQLADRYNWFCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGSQFKAIVEYAPSQRVPKPCTKKDGREGTIYKDPDYLE
FLKLIAKPVEHLPSAEIQLERKEAEQAGGAKEPPIITPLMEYVRQKRAIGSGTQVSSVVR
KVRRRAGAASLNKRGSTSTKRVSEKKKYILKDSAKHTSRKDKSTFTVVPRREDQLASSSG
KETLENEIGSVSGIPVIADSGKKKILLLKGKEREIPSAPEGMLPQGSVTSAGSYVSAAPK
QNQRREAGGKLIRNILLNNEGRQSQSSTEIQPQQKILSLNSDVKRASRPSNARLGLNGQV
SNNEPNSMSSEGDRKRATVDKFSKKDLHGTTNVSEKQEKHTRNKDRPDRGVWAPLRRADS
SHASDEHLPSVPQRPQLPSDSFEVSHGEVKDDTSYGSRTGEVINPTSGRNSSHVENGSQR
HFGRRGSAHNIKDDGSMNVSEGKPSKRGATVHGAPEKQVWVQKSASGS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccattggtgaggacgaaggtgttagttcggcacttgcctccgtctctgtct
cactccgatctccttcagcaaatcgaccatcaactcgctgaccgctacaactggttttgc
ttccgtccgggaaagaacagccagaagaatcagaggtactctcgagcctacatagacttc
aagcggcctgaagatgttttcgagtttgctgaattctttgatggacatgtgtttgttaat
gagaaggggtctcagttcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
ccatgtaccaaaaaggatggccgtgaagggactatatataaagatcctgattatttggag
ttcctaaaacttattgcgaagcctgttgagcatcttcctagtgcagaaatacagctggaa
agaaaggaagcagaacaagctggtggtgcaaaagagcctcctattattacccccctcatg
gagtatgttcgtcagaaacgagctatcggaagtgggacccaggtttcatcagttgttcgg
aaggttagaagaagagcgggggctgcatctcttaacaaacgtggctcaacttctacaaaa
cgggtctctgagaagaaaaagtacatattaaaggacagtgctaaacatacaagtcgaaaa
gacaagtcaactttcactgtggtccccaggcgagaggatcaattggccagttcaagtgga
aaagaaaccttagaaaatgaaattggttctgtttcgggaatccctgtgattgcagactct
ggaaagaagaaaatcctactccttaaaggaaaagagcgtgaaataccttctgctcctgaa
ggtatgctaccacaggggagtgtaacatccgctggaagttatgtttcagctgctccaaag
cagaaccaaaggcgtgaggctggtggaaagttgatcagaaacatacttttaaataatgag
ggacgccaaagtcaaagttcaaccgaaattcagcctcagcagaaaattctaagtctgaac
tcagacgttaagcgggcgtctcggccctccaatgcaaggttagggttgaatggtcaagtc
tctaataatgagcctaactcaatgagctctgaaggggatagaaagagggctacagttgat
aaattttcaaagaaggacctgcatggtaccactaatgttagtgagaagcaagaaaaacat
acaagaaacaaggatagaccagatcgtggtgtttgggctcctcttcgtcgtgctgatagt
tcacatgctagtgatgagcatttgccatccgtgccacaacgtcctcaactgccctctgat
tcctttgaagtttcccatggagaagtgaaggatgatacctcttatggaagcaggactggg
gaagttataaatcctacaagtggacgtaatagttctcatgtagagaatggttcacaaaga
cattttggtcgccgtggaagtgcccataatataaaagatgatggttctatgaatgtaagt
gagggaaagccatctaaaagaggtgctactgttcatggtgcccctgagaaacaagtgtgg
gttcaaaaatcagcttcaggttcttag
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