Prunus persica (peach): 18792250
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Entry
18792250 CDS
T03092
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pper
Prunus persica (peach)
Pathway
pper03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pper00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
18792250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pper03400
]
18792250
Enzymes [BR:
pper01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
18792250
DNA repair and recombination proteins [BR:
pper03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
18792250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
18792250
NCBI-ProteinID:
XP_020410771
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All DBs
Position
G1:complement(5341140..5357279)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEETKFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGS
YGLKESVLATCLIDALGMARDSEDALRLINWRKGGAKTGVNAGNFSLVAAEVLQRRQGVS
SGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGTSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVGDATIAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHPEYGHAMSDIVIQNVLADRCILD
GEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLNTHRSEGDPCWSLIARSVDEVERFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
VPNTYPRKFVSFCRVGTGLSDEDLEAVATKLKPYLRKYEYPRKAPPSFYQVTNNSKERPD
VWVESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVESFIELVH
SSNGTTQRGTDYGALQDTKTKHKKSSRKEEKKNLSVVPSHLVQTDVSSVKEDTLLFSNMM
FYFVNVPPTNSLDSLHKLVVENGGTFSMNLNNAVTHCVAADSKGIKYQAAKRHGDIIHFS
WVLDCCSQKRLLALQPKYYLFISESSKMKLQEEIDEFSDSYYWDLDLADIKQLLSNMYRS
EDSKTIDHYKKKYCPMEKWSRFHGCCIYFIPSTHSLKPDWEVLLRFTLRRLKIQVLISAG
RVTDSIAHATHLVVLSVQGLDVDSGTLLQSFTESEKRFLHNKKLHIVGSQWLEDCLERDQ
RLQEETYSLKPNGWEEFSIEEWKHDMDLEEAPSDVDTLQINNSSASPNQEGKEIGGKEAP
ENYRILASPERESKRKRGRPALTSMNKGKTGVNQARRTRVRIGRKPAKISGNESDEGGSH
DNTLRAEEVDKEARKHGMMSDASLDIQENEAIKDSESLQRDNAAVQEVAEDISFEDHSYK
IPNVEMIEKCNIEDSGKPEKLEVMADPVQAMLFDMIPSLAMKKVETTNTSIEKEKPAVDL
NAGPSKKKKVSYKDVAGELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggagaccaagttcagcgtcctatgcagcctcttcaactggatgcaaagaagc
aaaacatcaaccctaaagcgctctaaattccgcaaatttctcgacactttctgtaaacct
gctgattatttcgattcgattcgcctaattcttcccagcctcgaccgcgagcgcggcagc
tatggccttaaggagtctgtgctcgccacctgcctcattgacgctctcggcatggccaga
gactccgaggacgctcttcgcctcatcaattggcgcaaaggcggcgccaagactggtgtc
aatgccggcaacttctcgctcgtggccgccgaggtgctgcaacgtagacaaggagtgagt
tcaggtggattaacaatcaaggagttaaatgacttgctcgatcgtttagcttcaagtgaa
aatagggcagagaagacttcagttctttctacgttgataaagaagacaaatgcacaggaa
atgaagtggattgtcatgattattcttaaagatctgaagctgggaactagtgaaaagagc
atttttcatgaatttcatccagatgctgaagacttgtttaatgtcacatgtgacttgaaa
ttggtttgtgaaaagctgagggatagaaatcagcgtcataaacgccaggacattgaagtt
ggaaaagctgtacgcccacaactagctatgagagttggtgatgcaactattgcatggaaa
aagcttcatggtaaggaagtggttgttgagtgtaaatttgatggggatcgcatccaaatt
cataagaatggaactgaaatacattacttctcaaggaattttcttgatcaccctgaatat
ggacatgcaatgtcagacattgttatacaaaatgttctggctgataggtgtattcttgat
ggtgagatgttggtctgggacacatcttccaatcgttttgctgagtttggttcaaatcaa
gaaatagccaaggcagcaagggatggacttgacagtgatagacagttgtgctatgttgca
ttcgatatcctctatgttggagatactagtgtaattcaccagagcttgaaggaacggcat
gagcttctccagaaagttgtgaaacctttgaagggtcgtttagaaattttagtacctaat
ggtggtcttaacactcaccgttctgaaggggatccttgttggtcgcttattgctcgtagt
gtggatgaagtcgagaggtttttcaaagaaaccatcgaaaatagagatgaggggattgtt
ttgaaggaccttggttctaaatgggaacctagtgatcggagtggaaagtggttaaaatta
aagccagattacattcgtgcaggctctgatttggatgttcttatcataggcggatactat
ggttctggacgtcgtggaggggaggtagctcaattcttggtgggtcttgctgaacgtcca
gtaccaaatacatatcctagaaaatttgtatccttttgcagagtgggcactggactttct
gatgaggatctagaagctgttgcaaccaaattaaagccttatttgaggaaatatgagtac
ccaagaaaggctccaccaagtttttatcaagtaacaaacaattcaaaagagagaccagat
gtttgggttgaaagccccgagaaatcaataatactttctataacaagtgacatcagaact
ataaggtctgaggttttttctgcaccatacagcctgagatttccacgtattgatcgagtt
agatatgataaaccttggcatgaatgtcttgatgtggaatcgtttattgagcttgtacat
tcaagcaatgggaccacacaaaggggaacggattacggtgctctgcaggatactaaaacg
aaacataagaaatcctctagaaaggaagaaaaaaaaaatctttctgttgttccctctcat
ttagttcagactgatgtttccagcgtcaaggaggacacattactattttcaaatatgatg
ttttactttgttaatgtgcctcccactaattctcttgattccttgcacaaacttgttgtt
gagaatgggggtactttctctatgaatttgaataacgcagttacgcactgtgttgcagct
gatagcaaagggattaaatatcaggcagcaaagcgtcatggagatataattcatttctct
tgggtattggattgttgttctcaaaagagacttcttgctttacagccaaagtactatctc
ttcatatctgaatcttcaaaaatgaagttacaagaagaaattgatgaattttctgactcg
tactactgggatcttgaccttgcagacatcaagcagcttttaagcaacatgtatagatct
gaggattccaaaactatcgaccattacaagaaaaaatactgtccaatggagaaatggtct
cgctttcacggctgctgcatttactttatcccatcaactcattccttgaaaccggattgg
gaagtccttttacgattcacactcagaaggttgaagattcaagttctcataagtgctggc
agagtcactgacagtattgctcatgcgactcatttggtagtcttgtcagtgcagggtctt
gatgtcgattctggaactttattgcaaagtttcactgaatcagagaaacgatttctgcat
aacaaaaagttgcatatcgttggatctcaatggttggaagactgcttggaaagggaccag
agactgcaagaagaaacatatagcttaaaacccaatgggtgggaagaattcagcattgaa
gagtggaaacatgacatggatctagaagaagcaccctctgatgtggacactctgcaaatc
aacaattcttctgcttctcctaaccaagaaggaaaagagataggaggcaaagaagctcca
gaaaactataggatcttggcctcacctgagagggaaagcaaaaggaaaagaggaagacct
gctctcacaagcatgaacaaaggaaaaactggtgtcaaccaagctcggagaacacgggtg
cgcattggaaggaagcctgctaaaatatcaggaaatgagtcagatgaaggtggctctcat
gataacacattacgtgcggaagaggttgataaggaagcaaggaaacatggaatgatgagc
gacgcaagtttagacatccaagaaaatgaagcaattaaagattctgaatcattacaaaga
gacaatgcagctgtgcaagaggttgctgaagacattagctttgaggaccattcttataaa
attcctaatgtcgaaatgattgagaagtgtaatatcgaagacagtggaaagccggagaaa
cttgaagttatggctgatcctgttcaagccatgttgtttgacatgattccaagtctggct
atgaagaaagttgaaactacaaatacgagtattgaaaaggaaaaaccagcagtagatctg
aatgcaggaccttcaaagaaaaagaaagttagctacaaggatgttgctggtgagctgctc
aaggattggtaa
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integrated database retrieval system
