Pseudomonas putida F1: Pput_3786
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Entry
Pput_3786 CDS
T00537
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppf
Pseudomonas putida F1
Pathway
ppf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pput_3786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppf03400
]
Pput_3786
DNA repair and recombination proteins [BR:
ppf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pput_3786
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pput_3786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
HAMP
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABQ79910
UniProt:
A5W700
LinkDB
All DBs
Position
complement(4247755..4249770)
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGAAV
PGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
IAQLRERLISS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgtcacacgtttccagccggctggcgaccagcccgaggctatc
cgccagttggtcgaaggcatagaggcggggctgtcgcaccagacgttgctcggggtgacc
ggttcgggcaagaccttcagcattgccaacgtcatccagcaggtgcagcgcccgacgctg
gtgctggcgcccaacaagacgctggccgcccagttgtacggggagttcaaggcattcttc
cccaacaacgcggtggagtacttcgtttcctattacgactactaccagccggaagcctac
gtgccgtcgtcggacaccttcatcgagaaggacgcctcgatcaacgaccacatcgagcag
atgcgcctgtcggcgaccaaggcgctgctggagcggcgtgacgcgatcatcgtgaccacc
gtgtcgtgcatctacggcctgggcagccccgagacctacctgaaaatggttctgcacgtg
gaccgtggcgacaagctcgaccagcgcgcgctgctgcgccggttggccgacctgcagtac
acccgcaacgaaatggactttgcccgcgccaccttccgggtacgcggtgacgtgatcgac
atcttcccggccgaatcggatctggaagccatccgcatcgagctgttcgatgatgaagtg
gagaacatcgccgccttcgatccgttgaccggcgaggttttccgcaagctgccacgtttc
acgttctaccccaagagccactacgtcaccccgcgggaaacgctgcttgaagcagtggag
ggcatcaaggaagaactgaaggagcgtctggagtacctgcacaaggccaacaagctggtc
gaagcgcagcgtctggagcaacgtacccgcttcgatctggagatgatcctcgagctgggc
tactgcaacggcatcgaaaactactcgcgctacctgtccgggcgtccggccggggcgccg
ccgcccaccctgtacgattacctgccgcctgatgcgctgctggtgatcgacgaatcacac
gtcagcgttccgcaggtcggcgccatgtacaagggcgaccgttcacgcaaggagaccctg
gtcgagtacggcttccgcatgccttcagcgctggacaaccggccgatgcgtttcgacgag
tgggaggatgtcagcccgcagaccattttcgtttcggccactccggggccctacgaggct
gagcatgccgggcgcgtggtggagcaggtggtgcgcccgaccgggctggtcgacccgcag
gtagaggtgcgcccggcgctgacccaggtcgacgacctgctgtccgagatccgcaagcgt
gtcgcggcaggcgagcgagtgctggcgaccacgttgaccaaacgcatggccgaggacctc
agcgattacctggccgaccacgacgtgcgggtacgctacctgcactcggacatcgacacg
gtggagcgggtggagattatccgtgacctgcgcctgggcaccttcgacgtgctggtgggc
atcaacctgctgcgcgagggcctggacatgcccgaggtgtcgctggtggctatcctcgat
gcggacaaggaaggttttctgcgttccgagcgctccctgatccagaccattggccgcgcg
gcacgtaacctcaatggccgggccattctgtacgccgataacgtaacaggttcgatgcag
cgggccattgacgaaaccgagcgtcgccgcgagaagcagatcgccttcaacgaagccaac
ggcatcgtgcccaagggcgtggtcaaggacatcaccgacatcatggagggtgccgccgtg
cccggtgcgcgcagcaagaagcgcaagggcatggccaaggcggcggaggagagcgcccgt
tacgaggccgaactgcgtacgccgggcgagatcaccaagcgcatcaagcagttggaagag
aaaatgatgcagttcgcccgcgacctggagttcgaagctgcggcgcagctgcgtgacgag
attgcgcagctgcgggagcggttgattagcagctga
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integrated database retrieval system