Pseudomonas putida GB-1: PputGB1_1689
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Entry
PputGB1_1689 CDS
T00650
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppg
Pseudomonas putida GB-1
Pathway
ppg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PputGB1_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppg03400
]
PputGB1_1689
Enzymes [BR:
ppg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputGB1_1689
DNA repair and recombination proteins [BR:
ppg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PputGB1_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABY97592
UniProt:
B0KH87
LinkDB
All DBs
Position
complement(1912471..1915896)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAATSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFLPVEDCFAQLKQWPRVVVSSEDLDPGAGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWDDFVTGSERLAITI
APLDDGLLLDDPGLALVAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
AAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaacctgcccggtgccgccctcagcctt
gccatcgccgaggccgccaccagcgctggccgcttcaccctgctgctgacagccgacagc
caggccgccgaccgtctggagcaggagctgcgcttcttcgccccggacctgccggtgctg
ccgttccccgattgggaaaccctgccctacgacctgttctcgccgcaccaggacatcatt
tcccagcgcatcgccagcctgtaccgcctgccggaactgagccacggcatcctcgtggtg
ccgatcaccaccgccctgcaccgcctggcacccacgcgcttcctgctgggcagcagcctg
gtgctggatgtgggccagaccatcgatgtggaacagatgcgcacgcgcctggaggccagc
ggctatcgctgcgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgctg
atcgacctgttcccgatgggcagcaagctgccctaccgcatcgacctgttcgatgacgag
atcgagacgctgcgcaccttcgaccccgagacccaacgctcgatcgacaaggtggattcg
gtgcgcctgctgccggcgcgtgaattcccgatgcagaaagaggaagtgacccgcttcaag
gcacgctttcgcgagcgcttcgatgtcgatttccgccgcagcgcgatcttccaggacctg
gccagcggcattattcccgctggcatcgagtactacctgccgctgttcttcgaagaaact
tcgaccctgttcgactacctgccggccgacacccaggtgttctcgctgcctggcgtggaa
caggccgccgaacacttctggaacgacgtgcgtgggcgctatgaagaccgccgtggcgac
ctcagccggccgctgctgccaccggccgaactgttcctgccggtggaggactgcttcgcc
cagctcaaacaatggcctcgggtggtggtcagcagcgaagacctcgacccaggtgcgggt
cgcgaacgctttccggcacgcgcgctacccaacctggccatcgaagccaaggccaaccag
ccgctggccgagctggccaacttcctcgaccagttccccggccgcgtgctgttcaccgcc
gaatcagcggggcgccgtgaagtgctgctggagctgctcgagcggctgaagctgcgcccg
cataccgtcgacggctgggacgacttcgttaccggcagcgagcgcctggcaatcaccatc
gcgccgctggacgacggcctgctgctggacgacccaggcctggccctggtcgccgaaagc
ccgctgttcggccagcgggtgatgcaacgccggcgccgtgacaaacgtggcgaaaccgcc
aacgatgcagtcatcaagaacctcaccgagctgcgcgaaggcgcaccggtggtgcacatc
gaccatggcgttggtcgctacctgggcctggccacgctggaaatcgacggccaggccgcc
gaatttctcaccttggaatacgccgagaacgccaagctgtacgtgccagtggccaacctg
cacctgatcgcccgctacaccggcagcgacgatgcgttggcaccgctgcaccggctgggc
tcggaggcctggcagaaagccaagcgaaaagccgccgaacaggtgcgcgacgtggccgcc
gagctgctcgacatctatgcccgtcgcgccgcacgcaagggctatgcatttgccgacccg
tcagccgactacgccaccttcagcgctggcttcccgttcgaggaaaccccggaccaacag
gccgccatcgaagccgtgcgtgccgacatgctggcgcccaagccgatggaccgcctggtc
tgcggcgatgtgggcttcggcaagaccgaagtggccatgcgcgcggcattcatcgccgtg
cacagcggccgccaggtggccgtactggtgcccaccacccttttggcccagcagcactac
aacagcttccgcgaccgcttcgccgactggccggtgacggtggaggtgatgagccgcttc
aagtcggccaaggaagtggccgccgctgccgccgaccttgccgaaggcaagatcgacatt
ctcatcggcacccacaagctgctgcaggacgatgtgcgcttcaaggacctgggcctggcc
atcatcgacgaagaacaccgctttggcgtgcgccagaaggaacagctcaaggccctgcgc
agcgaggtcgacattctcaccctgaccgccacgccgattccgcgcacgctgaacatggct
gtggcgggcatgcgcgacctgtccatcatcgccacgccgccggcgcgccgcctgtccgtg
cgcaccttcgtcatggagcagaacaagagcacggtgaaggaagcgctgctgcgtgagttg
ctgcgcggcggccaggtttactacctgcacaacgatgtgaaaaccatcgaaaaatgcgcc
gccgacctcgccgagctggtgcccgaggcacgcatcggcattggccatgggcaaatgcgc
gaacgcgagctggaacaggtgatgagcgacttctaccacaagcgcttcaacgtgctggta
gcctcgaccatcatcgaaaccggcatcgacgtgcccagcgccaacaccatcgtcatcgaa
cgtgccgacaagttcggcctggcccagttgcaccagctgcgcggccgagttggccgtagc
caccaccaggcctacgcctacctgctcacgccgacccggcagaaggtcagtgccgacgcc
gaaaagcgcctggaagccatcgccaacacccaggacctgggcgcgggctttgtgctggcc
accaacgacctggaaatccgcggtgccggcgagctgctgggcgaaggccagagcgggcag
atccaggccgtgggcttcaccctgtacatggaaatgctcgagcgcgcggtcaaggcaatc
cgtaaaggcacccagccaaaccttgaacaaccactgggcggcggcccggagatcaacctg
cgcctgccggcgctgatccccgaggactacctgcccgacgtgcatgcgcggctgatcctg
tacaaacgcatcgcctcggctgccgacgaggaaggcctcaaggacctgcaggtcgagatg
atcgaccgcttcggcttgctgcccgagccaaccaagaacctgatgcgcctgacttcgctc
aagctgcacgcggaaaagctcggcatcaagaaagtcgatgccggccccaatggcggcaag
ctcgagttcgaagccgaaaccccggtcgacccgctgaccctgatcaagctgatccagggc
cagcccaaacgatacaagttcgaaggtgctacccagttccgtttcctggtgccgatggaa
cgccccgacgaacgcttcaataccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
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