Halopseudomonas phragmitis: BVH74_06840
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Entry
BVH74_06840 CDS
T07765
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppha
Halopseudomonas phragmitis
Pathway
ppha02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppha00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BVH74_06840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppha03021
]
BVH74_06840
Transcription machinery [BR:
ppha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BVH74_06840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Rhabdo_ncap
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AQZ94485
UniProt:
A0A1V0B3K7
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Position
complement(1486614..1488464)
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AA seq
616 aa
AA seq
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MSGKAQQQSRLKELIARGREQGFLTYAEVNDHLPEDISDPEQVEDIIRMINDMGITVFET
APDADALLLADNDADEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMAAISMFPGTVDGILADYQRITEEGGRLSDIFSGYIDPDDDGLSASDN
DDIPTENLKDDDSNDDDDEDEDGDDSSDDEGDGGPDPEEARLRFTAVAEQLEKAKLALKK
HGRGSDQATAELEALALLFMPIKLVPKQYEALVNRVRDSQDQIRAQERAIMQLCVRDARM
PRADFLRSFPGNEVNEGWVDSLLAEAPRYAEALEALKPEIIKAQQKLASLEQDAELTISE
VKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMESPIDSATV
ESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSDHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatcccgtctcaaggagctcatcgcccgcggtcgcgag
cagggctttttgacctatgcggaagtcaacgaccatcttccggaggatatctccgatccg
gaacaggttgaagacattattcgcatgatcaacgacatgggcatcactgtcttcgagaca
gccccggatgccgatgctctgttgctcgccgataacgacgccgacgaagccgccgccgaa
gaggccgctgccgcgctggctgcggtggaaagcgatattggccggactaccgacccggtg
cgcatgtatatgcgtgaaatgggcaccgtcgaactgctgactcgtgaaggcgaaattgaa
atcgccaaacgcatcgaggaaggcattcgcgaagtcatggccgcgatatccatgttcccg
ggtactgttgacggcattcttgccgattaccagcggatcaccgaggaaggtggccgcctg
tcggatattttcagcggctatatcgacccggacgacgacggcctgtccgccagtgacaac
gacgacatcccgaccgagaatctcaaagacgacgacagtaatgacgacgacgatgaggac
gaggacggcgacgacagttccgatgacgaaggtgacggcggcccggacccggaagaggct
cgcctgcgtttcaccgcagtggccgagcagttggaaaaagccaagctggcactgaaaaag
cacggccgtggcagcgaccaggcgaccgccgagctggaagcattggcactgctgttcatg
ccgatcaagctggtgcccaagcagtacgaagcgctggtcaaccgggtgcgtgactcccag
gaccagattcgtgcccaggagcgcgccatcatgcagctgtgcgtgcgcgatgcacgcatg
ccgcgcgccgacttcctgcgcagcttccccggtaacgaagtcaacgaaggctgggtcgac
agtctgctggctgaagcaccgcgctacgccgaagccttggaagcgctcaagcctgagatc
atcaaggcccagcaaaaactggcctcactggaacaggatgccgaactgaccatctccgag
gtcaaggacatcaatcgacgcatgtcgatcggtgaggcacgggcgcgccgggccaagaag
gaaatggttgaggccaacctgcgtctggttatctcgatcgccaagaagtacaccaaccgc
ggcttacagttcctcgacctgatccaggaaggcaacatcggcctgatgaaagcggtcgac
aagttcgaatatcgccgtggctacaagttctcgacctacgctacctggtggattcgtcag
gcgatcactcgctcgatcgccgaccaggcacgcaccatccggattccggtgcacatgatc
gagacgatcaacaagctcaaccggatttcccgccagatgttgcaggaaatgggtcgtgaa
ccgaccccggaagagctgggcgaacgcatggacatgcccgaggacaagatccgcaaagtc
ctgaagatcgccaaggagccgatctcgatggaaaccccgattggtgacgacgaagactcg
cacctgggcgatttcatcgaagactcgaccatggaatcaccaatcgactcggcgactgtg
gaaagtctcaaggaagccacccgcgaagtactcgccggcctcactgcccgcgaagccaag
gtgctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaagaggtcggc
aagcagttcgatgtaacccgcgagcggatccgtcagatcgaagccaaggccctgcgcaag
ctacgtcacccgacccgcagtgaccacttgcgcagcttcctcgacgagtaa
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