Halopseudomonas phragmitis: BVH74_12960
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Entry
BVH74_12960 CDS
T07765
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppha
Halopseudomonas phragmitis
Pathway
ppha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BVH74_12960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppha03400
]
BVH74_12960
Enzymes [BR:
ppha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVH74_12960
DNA repair and recombination proteins [BR:
ppha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BVH74_12960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQZ96821
UniProt:
A0A1V0BAB1
LinkDB
All DBs
Position
complement(2780288..2783764)
Genome browser
AA seq
1158 aa
AA seq
DB search
MPSTPTILTLPELSQTRSLWSGLQGAAQALAIAEAASTHSGLSLVITKDSAEADRLEREL
RFFAPALPVLSFPDWETLAYDRFSPHQDIISQRLRALHQLPQVKQGILVVPMTTLLQRIA
PRGFLAGSVLMLEVGQRLDMEAMRLDLDAAGYRCVDTVYEHGDYAVRGALLDLYPMGSRL
PYRIDLFDDDIETLRTFDPETQRSIDKVERIHLLPAKEFPLDKSALTGFRARFRERFDVD
YRRCPIYQDLSEGLVPPGIEYYLPLFFDELGTLFDYLPANTQLFSLPEIEAAAEHFWQDV
RSRYEDQRIDPTRPLLPPSALFLAVEECFAKIKQYPRVICHQNQQPAAVGHSIFACPQPP
ELTVDNKREQPLEALLGFIDRFPGRIAFIAETAGRREALLDLFKPAELSPEAFEDWPAFL
ASDSRLGLLIAPIDQGLICEHPPVALIAESQLFGQRVMQRRRRGKATDLGDAVIRNLTEL
REGAPVVHIDHGVGRYRGLTNLEIDDQQAEFLMLEYADEAKLYVPVSNLHLIARYSGAED
DSAPLHRLGSEQWQKAKRKAAEQVRDVAAELLDVYARRAARKGFSFAHPERDYQAFAEAF
PFEETADQQAAIEAVINDMLSNKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVP
TTLLAQQHYNSFRDRFADWPVKVEVMSRFKSGKEVKSAISELGEGKVDIIIGTHKLLQDD
IQFKDLGLVIIDEEHRFGVRQKERLKALRSEVDVLTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLSVKTFVMQQQPAVVKEAILRELLRGGQVYFLHNEVETIEKCAADLAELVPEAR
IGISHGQMPERALEQVMRDFYHRRFNVLVTSTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPHGKKVTSDAEKRLEAIAAAQDLGAGFTLATHDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIQQGKQPELEQPLSGGPDINLRLPALIPDDYL
PDVHARLILYKRIANAGDDEQLKDLQVEMIDRFGLLPEPVKTLFRVTSLKLRCEPLGVVK
VDVGPEHGRLEFGTNTAVDPLTLVRLIQDSPQRYRLEGATIFRFNAPMGNAELRLNTLEA
LIDRLQQPTETTGKGKRP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccacaccgacgatcctcactcttcccgagctcagccagacccgcagcctttgg
agcgggctccagggcgccgcccaggcgttggctatcgccgaagccgccagcacccactcg
ggcctgagcctggtcatcaccaaggacagcgccgaagctgaccggctggagcgagaactg
agattctttgccccggcactgccagtactcagttttccggactgggaaaccctggcctac
gaccgtttctcaccacaccaggacatcatctcccagcgcctgagggccttgcaccagtta
ccccaggtcaaacagggcattctggtcgtccccatgaccactctgctacagcgcattgcc
ccgcgcggctttctggccggctcggtactgatgctcgaagttggtcagcggctggacatg
gaagccatgcgcctggatctggacgccgccggctaccgctgcgtcgacactgtttatgaa
catggcgactacgccgtccgcggcgccctgctcgatctctacccgatgggtagtcgacta
ccctaccggatcgacctgttcgatgacgatatcgaaaccctgcgcaccttcgacccggaa
acccaacgctcgatcgacaaggtcgaacgtattcacctgttgccggccaaggaattcccg
ctcgacaagtcagccctgaccggctttcgcgcccgtttccgcgagcgcttcgatgtcgac
taccggcgctgtccgatttatcaggacctgagcgaaggtctggtaccaccaggcattgag
tattacctgccgctgttctttgacgagttgggcaccctgttcgactaccttccggccaac
acccagcttttcagcctgccggagatcgaagcagccgcagagcatttctggcaggacgta
cgcagccgctatgaagaccagcgcatcgacccgacccggcccctgttgccgcccagtgca
ctatttctcgccgttgaagagtgcttcgccaagatcaagcagtaccctcgggtcatctgc
catcagaaccagcaaccggccgccgtcggtcacagtatctttgcctgcccccagcccccc
gagctgacggtcgataacaagcgtgaacagccgctcgaggcgctgctcggtttcatcgac
cggtttcccggacggatcgccttcatcgccgaaactgctgggcgccgggaggcgttgctc
gacctgttcaagccggccgaactgagcccggaggcgttcgaagactggccagcctttctt
gccagtgacagccgccttggcctgctgatcgcgccgattgaccagggcctgatctgcgaa
cacccgccagtagcgctgatcgccgaaagccagctgtttggccagcgggtcatgcagcgc
cgtcggcgcggcaaggcgaccgacttgggcgatgcagtcatccgcaacctcaccgaactg
cgcgaaggcgccccggtggtgcatatcgaccatggcgttggacgctatcgcggactgacc
aatctggaaatcgacgatcagcaggccgagttcctgatgctcgaatacgccgacgaggcc
aagctctacgttccggtctccaacctgcacctgatcgcccgctacagcggtgccgaggac
gacagcgcgccactgcaccggcttggctccgaacagtggcagaaagccaagcgcaaggct
gccgagcaggtccgcgacgtagccgccgaactgctcgacgtctacgcccgccgtgccgca
cgcaagggcttcagcttcgcccatcccgagcgtgattatcaggccttcgccgaagccttt
ccgttcgaggagaccgccgaccagcaggctgcgatcgaggcggtcatcaacgacatgctt
agcaacaaacccatggatcgcctggtctgcggcgatgtcggcttcggcaagaccgaagtc
gccatgcgcgccgcgttcatcgccgtccacagcggcaagcaggtagcggtactggtaccc
actaccctgctggctcagcagcactacaacagcttccgtgaccgctttgccgactggccg
gtcaaggtcgaagtcatgtcccggttcaaatcgggcaaagaggtcaagagcgccatcagc
gagctgggcgaaggcaaagtcgacatcatcatcggcacccacaagctgctgcaggacgac
attcagttcaaggatcttggcctggtaatcatcgatgaagaacaccgctttggcgtgcgc
cagaaggaacgcctcaaggcgctgcgaagcgaggtcgacgtacttaccctgaccgccacg
ccaattccgcgaaccctgaacatggcaatgtccggcatgcgcgacctgtcgatcatcgcc
accccgccggcccgccggctgtcggtaaagaccttcgtcatgcagcaacagccggcagtg
gtcaaggaggcgattctgcgcgaactgctgcgcggcggccaggtgtacttcctgcacaac
gaggtggaaaccatcgagaagtgtgctgccgatctggccgaactggtacccgaagccagg
atcggcatcagtcatggccagatgcccgaacgcgcgctggaacaggtcatgcgcgacttc
tatcatcgccgcttcaacgttctggtgacctcgaccatcattgaaacagggatcgacgta
cccagcgccaacaccatcattatcgaacgcgccgacaaattcggcctggcccagttgcat
cagctacgcggccgggtcgggcgcagtcaccaccaggcctacgcctacctgctgacccca
catggcaaaaaagtcaccagcgatgcggaaaaacgcctggaggccattgccgctgcccag
gacttgggcgcgggtttcaccctggccacccacgatctggaaatccgcggcgctggcgaa
ctgctgggcgatggccagagcggccagattcaagccgttggcttcaccttgtacatggaa
atgctcgagcgcgcggtcaaagccatccagcagggcaagcagccagagctggaacagccg
ttgtccggcggacctgacatcaacctgcgtctacctgcgttgattcctgacgactacctg
cccgacgtacatgcgcgactaattctctacaagcgcatcgccaacgccggcgacgatgag
caactcaaagacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgaaccagtc
aagactctgttccgggtaacctcgctgaaactgcgctgcgaaccactgggcgtggtcaag
gtcgatgttggccccgaacatggtcgcctggaattcggcaccaacaccgcagtcgaccca
ctgacgctggtacgactgattcaggacagcccacaacgctaccggcttgaaggcgctacc
atattccgcttcaatgcccccatgggcaatgccgagctgcgtctgaacacgcttgaagcc
ctgattgatcgcctgcaacaacccacagaaacaaccggcaaaggaaaacgcccatga
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