Pannonibacter phragmitetus: APZ00_18050
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Entry
APZ00_18050 CDS
T04214
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APZ00_18050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_18050
Enzymes [BR:
pphr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APZ00_18050
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
APZ00_18050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_16
SecA_DEAD
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ALV28721
UniProt:
A0A0U3EAZ1
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All DBs
Position
3946990..3950490
Genome browser
AA seq
1166 aa
AA seq
DB search
MFESLLRDKGNITLASVPDGAEALALARILDEGPKEGLCAVFVARDATRAQGLIEALSFF
APDVEALSLPAWDCLPYDRVSPNPAISARRLLVLGELARGLEGSGRKVLVTTVNAAVQRL
PERSWVAGQTFSLSAGTRADLTSIAAWLELNGFSRTPTVRETGEYAVRGGILDLFAPGAE
APVRLDFFGDTLETVRAFDPESQRTTAPVKKLDLVPMSEVVLTEETISRFRRNYIGRFGA
ARREDILYQSVSEGRRYAGMEHWLPLFHETLETLFDYVEGVPLVLDSRAADALRERLDQV
AEHYTARKDALDNGHLAGSVPYMPVETGGLYLAPEEWTSRLADAASCQMDVFTPPPGSGR
QVVDFAGRQGRNFAAERAAGDVNIFDALVRHVRALVAEERKVILSCWSEGSRDRLGQILF
DHGLELAAPADTFANMQALPPRTVALSLLGLETGFEVDRLVFISEQDVLGDRLVRKGRRK
AKGANVLTEATSLSEGDLVVHVDHGIGRFIGLKTIEALGAPHDCLELQYHGGDKLYLPVE
NIELLTRYGSEETDVQLDKLGGGAWQARKARMKKRILEIADGLIKTAAARALKTAPVIET
PEGVYDEFATRFPYDETEDQLTAIDAVFEDLSSGRPMDRLVCGDVGFGKTEVALRAAFVA
AMSGRQVAVVVPTTLLARQHFRTFSTRFHGLPVNVAHASRLVSPKELSATKKGLEDGSVD
IVVGTHALLGTGVKFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQQ
ALTGLRELSLIATPPVDRLAVRTFISPLDPLVVREALLREHYRGGQSFYVCPRVSDLAER
AEFLAESVPEVKVAIAHGQMAAGQLEDVMNAFYEGKYDVLLSTTIVESGLDIPTANTLIV
HRADMFGLAQLYQIRGRVGRSKTRAYALFTVPAAGKLTATAERRLKVLQSLENLGAGFQL
ASHDLDIRGAGNLLGEEQSGHIKEVGYELYQQMLEEAVAQLKDGGNELGEDQWSPQINVG
TPVLIPEDYVPDLNLRLSLYRRLADLTEAQEIDAFGAEMIDRFGPLPEEVQHLLKIVFIK
GLCRKANVEKVDSGPKGIVISFRNSEFANPAGLVGYIAEQGVLAKIRPDQKVVLSRDWER
AEDRLKGTAVIMSKLAKLAGGGKAAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgagagccttctccgcgacaagggcaacatcacgctggccagcgtgccggatggg
gccgaggcgctggcgcttgcacgcattctggacgaagggccgaaagaggggctttgcgcc
gtcttcgtcgcccgcgatgccacgcgggcgcaggggctgattgaggcgctgagcttcttt
gcacccgatgtggaagccctgtcgctgcccgcctgggactgtctgccctatgaccgtgtg
tcgccaaacccggccatcagcgcccggcggctgctggtgctgggtgagctggcgcggggg
cttgaaggctctggccgcaaggtgctggtcaccacggtcaatgccgccgtgcagcgcctg
ccggagcgcagctgggtggcgggccagaccttttccttaagtgcaggcacgcgcgcggat
ctcacctccatcgccgcctggctggaactcaacggcttttcccgcacgccgaccgtgcgt
gagaccggcgaatatgcggtgcgcggcggcattctcgatctcttcgcgcccggcgcggag
gctcccgtccgcctcgacttcttcggtgacacgctggagaccgtgcgcgccttcgatccg
gagagccagcgcaccaccgcgccggtgaagaagctggatctggtgccgatgagcgaagtc
gtgctgacggaggagacgatctcccgtttccgccgcaactacatcggccgcttcggcgct
gcgcggcgcgaggacattctctaccagtcggtcagcgagggccgccgctatgccggtatg
gagcactggctgccgctgttccatgaaacgctggaaaccctgttcgactatgtggagggt
gtgccgctcgtccttgattcccgcgcagcagatgccctgcgcgagcggctggatcaggtg
gccgagcactacaccgcccgcaaggacgcgctcgacaacggccatctggccgggtccgtg
ccctatatgccggtggaaaccggcgggctctatctggcacctgaggaatggacctcgcgc
ctcgccgatgccgccagctgccagatggatgtgtttacgccgccgccgggttccggccgt
caggtggtggatttcgccgggcgtcagggccgcaacttcgccgcagagcgtgctgcaggc
gacgtcaacatcttcgatgcgctggtgcgccatgtgcgggcgctggtggccgaagagcgc
aaggtcatcctgtcctgctggagcgaaggctcgcgcgaccggctggggcagatcctgttc
gaccacgggctggagctggccgcgcccgccgatacctttgccaacatgcaggccctgccg
ccgcgcacggtggcgctgagccttctcggccttgaaaccggcttcgaggtggaccggctg
gtttttatctccgagcaggatgttctcggtgaccggctggtgcgcaaggggcggcgcaag
gccaagggcgccaatgtcctcacagaggccaccagcctgtcggaaggcgatctcgtcgtc
cacgtggaccacggtatcggccgcttcatcggcctgaagaccatcgaggcgcttggcgca
ccgcacgactgcctggaactgcaatatcacggcggcgacaagctgtatctgccggtcgaa
aacatcgagcttctgacgcgctacggctcggaagagaccgatgtgcagctcgacaagctg
ggcggcggcgcctggcaggcacgcaaggcgcgcatgaagaagcgcattcttgagattgcc
gatggcctgatcaagaccgccgctgcccgtgccctcaagaccgcgcctgtgatcgaaacg
ccggaaggcgtctatgacgagttcgccacccgcttcccctatgacgagacggaagaccag
ctgaccgccatcgacgcggtgttcgaggatctgtcctcgggccgcccgatggaccggctg
gtctgcggcgacgtgggtttcggcaagacggaagtggccctgcgtgcggcctttgttgcg
gccatgtccggccgtcaggtggcggtcgtggtgcccacgacgctgcttgcccgccagcac
ttccgcaccttctcgacgcgcttccatgggttgccggtcaacgtcgcccatgcctcgcgc
ctcgtcagcccgaaagagctttcggccacgaagaagggcttggaagatggctcggtcgat
atcgtcgtcggcacccatgctctgctcggcacgggcgtgaagttccgggatctcggcctt
ctcatcatcgacgaggagcagcatttcggcgtgaagcacaaggagcggctgaaggagctg
aagtcggacgtgcatgtgctgacgctttcggccacgcccattccgcgcaccctgcagcag
gcgctgacgggcctgcgcgagttgtcgctgatcgcaacgccgccggtggaccgccttgcc
gtgcgcaccttcatttcgccgctggatccgcttgtggtgcgcgaggcgctgctgcgcgag
cattaccgcggcggccagagtttctatgtctgcccgcgcgtgtccgatcttgccgagcgg
gcggagtttctcgccgaaagcgtgccggaggtgaaggttgccatcgcccatggccagatg
gcggcggggcagctggaggacgtgatgaatgccttctacgagggcaagtatgacgtgctg
ctgtccaccaccatcgtggaatcgggcctcgatatccccaccgccaacacgctgatcgtg
caccgggccgacatgttcggccttgcccagctttaccagatccggggccgtgtcggccgc
tccaagacccgcgcctatgcgctcttcaccgtgcctgccgccggcaagctgacggcgacg
gcggagcgccgcctcaaggtgctgcaatcgctggaaaacctcggcgccggcttccaactg
gccagccacgacctcgacattcgcggcgcgggcaatcttctgggcgaagagcagtccggc
cacatcaaggaagtgggctatgagctctaccagcagatgctggaagaagcggtggcgcag
ctgaaggatggcgggaacgagcttggtgaagaccagtggtcgccgcagatcaatgtgggc
acgccggtgctcatcccggaagactatgtgcccgatctgaacctgcgcctgtcgctttac
cggcgcctcgccgatctgacggaagcgcaggaaatcgacgcctttggtgcggagatgatc
gaccgcttcggcccgctgccggaagaagtgcagcacctgctgaagatcgtcttcatcaag
ggcctgtgccgcaaggccaatgtggagaaggtggattcggggccgaaggggatcgtcatc
tcgttccgcaacagcgagtttgccaatcctgcagggctcgtcggctacatcgccgaacag
ggcgtgctggccaagatccgcccggatcagaaggtcgtgctgtcacgagactgggagcgg
gcggaagaccggctgaagggaactgctgtcatcatgtccaagctggcaaagctggcggga
ggcggcaaggcggcggcttga
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