Candidatus Pelagisphaera phototrophica: GA004_09505
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Entry
GA004_09505 CDS
T09061
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ppht
Candidatus Pelagisphaera phototrophica
Pathway
ppht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GA004_09505 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppht03400
]
GA004_09505 (uvrB)
DNA repair and recombination proteins [BR:
ppht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GA004_09505 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GA004_09505 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
Kinesin
Motif
Other DBs
NCBI-ProteinID:
QXD33891
LinkDB
All DBs
Position
2189081..2191087
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AA seq
668 aa
AA seq
DB search
MGKLFDLNSDYVPTGDQPQAIDQLVTSLEKGNRYQTLLGVTGSGKTFSMANVIAQTERPA
LIISHNKTLAAQLYSEFKSFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDSSINDEID
RLRISATSSLISRRDVIVVASVSCIYGLGSPEDFQELMIPLQIGEELGRDIFLNRLIEIQ
YERNDIDLSRGRFRVRGDVVDVMPAYLEKGLRVEFWGDEIEGLSEFDPTTGSEIRKLDQF
NLYPANQFVTTSAKIENAIGAIKSELKDRVGTFENEGKLLEAQRISMRTNYDLEMLKEVG
FCNGIENYSMQLSGRKTGERPSCLIDFFDKDFLLFVDESHVSIPQIGAMYAGDRSRKTTL
VEHGFRLPSALDNRPMNFDEFIEVTGTTIFVSATPAKFELEKSAVIAEQVIRPTGLLDPV
VEIRSTKGQVENLIGEVNRAIESHERILVTTLTKRLSEDITSYLRDRDIRVEYLHSDIDA
IERVEILRRLRAGDFDVLVGINLLREGLDLPEVALVAILDADKEGFLRSETSLVQTAGRA
ARHEKGRVILYADVMTNSIRRTVEVTESRRAKQIEHNERYGITPKSVVRPVQESLHVSEE
EDSILLVGEDDDVEAVIDELTKEMDEAAAKLEFERAALLRDQIDALRSGEFGKNAKPRGR
ARSYGGRR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atagggaagctcttcgatctcaattcagactatgtaccaacaggggaccagccccaggcg
atcgatcaattagttacttcacttgaaaaggggaaccggtaccagacgcttttgggcgtc
accggttcggggaaaacttttagtatggccaatgtcattgctcagactgagcgaccggca
ctgatcatatcccacaacaagactctggctgctcaattgtattcagaatttaaaagcttt
ttcccaaacaatgcagtcgagtactttgtaagctactacgactactatcagcccgaggcc
tatgtaccttcaactgatacattcatagaaaaagattcctcgattaacgatgaaatcgat
cgattaaggatatcggcaacgagtagcctgattagtcgcagggacgttatcgtagtggcg
agtgtttcctgcatatatggtctcggctcgcctgaggattttcaggaattgatgatcccc
ctgcaaattggagaggagcttggcagagacatctttttgaatcgattgattgaaattcaa
tacgagcgaaacgacattgatttgagtcgaggacgatttcgcgttcgaggagacgtggtt
gatgtgatgcctgcgtatttggagaaggggttgcgggttgagttttggggcgatgaaatc
gaagggctttcggagtttgatcccacaactggctcggagatacgtaaacttgaccagttt
aacttatatcccgctaaccagttcgttacgacgagcgcgaaaattgagaacgcgatcggc
gccataaagtctgagttgaaagatcgcgtgggcacgttcgaaaacgaaggcaagcttttg
gaagcacagcgaatcagcatgcgaaccaactatgatttagaaatgctgaaagaggttggt
ttctgcaatggtattgagaattactcgatgcagctgtctgggcgtaaaacaggagaacgg
ccttcttgcctgatcgactttttcgacaaggacttcctgttgttcgtagatgagagccat
gtgtccatcccgcaaataggcgccatgtacgcgggagaccggtctcgaaagacaaccctt
gtcgagcatggttttcgccttccatcggccttagacaatcgccccatgaactttgacgag
tttatcgaggttacgggcaccacgatttttgtttccgcaactccggctaagttcgaattg
gaaaagagcgccgtgattgcggagcaagtgatccgccccactggcctgctcgaccctgta
gttgagattcgcagtacgaaaggacaggtcgaaaatctcatcggggaagtgaatcgagcc
attgaatcgcacgagcgtattttagtgaccactctaacgaagcggctgtccgaggatatc
acatcctacctacgggatcgagacatccgggtcgagtacctgcattcagatatcgacgct
atcgagcgcgttgaaatacttcgtagattgcgggctggtgactttgacgttctcgttggc
atcaatcttctccgagaaggacttgatttgcctgaggttgctctcgtggccattctcgat
gcagacaaggaagggtttcttcgtagtgaaaccagtcttgtacagacggcaggaagggcg
gcccgacacgaaaaaggacgcgtcattctttacgccgatgtaatgacgaattcgattcga
agaacggttgaggttacggaatccagaagagcaaagcaaattgagcacaatgagcgttac
ggtatcaccccgaaaagtgtagtgagacccgtgcaggagagtctgcatgtgagcgaagaa
gaagactcaattttattagtgggtgaggacgatgacgttgaagccgttatcgacgaacta
acgaaggagatggatgaagcggctgcaaagttagaatttgagagggcggcgctgctaaga
gaccagattgatgcacttcgttcaggcgagttcggaaaaaacgctaagccaagagggcgt
gctcgttcttacggaggtagacgctga
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