Pseudomonas putida ND6: YSA_01480
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Entry
YSA_01480 CDS
T02170
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YSA_01480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_01480
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YSA_01480
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YSA_01480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFK67580
UniProt:
I3UQ09
LinkDB
All DBs
Position
768208..771633
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEALEPGVGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITI
APLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
AAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaacctgcccggtgccgccctcagcctt
gccatcgccgaagccgccagcagcgctggccgcttcaccctgctgctgacggccgacagc
caggccgccgaccgtctggagcaggagctgcgcttctttgccccagacctgccagtgctg
ccgttccccgattgggaaaccctgccctacgacctgttctcgccgcaccaggacatcatc
tcccagcgcatcgccagcctgtaccgcctgccggagctgagccacggcatcctcgtggtg
ccgatcaccaccgccctgcaccgcctggcacccacgcgttttctgctgggcagcagcctg
gtgctggatgtgggccagacgatcgacgtggaacagatgcgcctgcgcctggaggccagc
ggctaccgttgtgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgctg
atcgacctgttcccgatgggcagcaaactgccctatcgcatcgacctgttcgataacgag
atcgaaacgctgcgcaccttcgaccccgagacccagcgctcgatcgacaaggtggattcg
gtgcgcctgctgccggcacgcgaattcccgatgcagaaggaagaagtgacccgcttcaag
gcacgctttcgcgagcgcttcgacgtcgacttccgccgcagtgcaatcttccaggacctg
gccagcggcatcatccccgccggtatcgagtactacctgccgctgttcttcgaagaaacc
tcgaccctgttcgactacctgccgaccgacacccaggtgttctcgctacccggtgtggaa
caggccgccgagcacttctggaacgacgtgcgcgggcgctatgaagaccgccgcggcgac
ctcagccggccgctgttgccgccggccgagctgttcctgccggtggaagattgcttcgcc
cggctcaagcagtggccccgggtggtggtcagcagcgaagcgctggagcctggcgtgggc
cgcgagcgcttcccggcgcgcgccctgcccaacctggccatcgaggccaaggccaaccag
ccgctggccgagctggccaacttcctcgaccagttccccggccgcgtgctcttcaccgcc
gaatcagcgggccgccgggaagtgctgctggaactgctcgaacggctgaagctgcgcccg
cataccgtcgaaggctgggacgatttcattaccggtgccgagcgcctggcgatcaccatc
gccccgctggacgacggcctgctgctggacgatccagggctggccctgattgccgaaagc
ccactgttcggccagcgagtgatgcagcgccggcgccgtgacaagcgcggcgaaaccgcc
aacgacgcggtcatcaagaacctcaccgagctgcgcgaaggtgcgccggtggtgcacatc
gaccatggcgtcgggcgctacctgggcctggccacgctggaaatcgacggccaggccgcc
gaattcctgacgctggaatacgccgagaacgccaagctgtatgtgccggtggccaacctg
cacctgatcgcccgctacaccggcagcgacgacgccctggctccgttgcaccggctgggt
tcggaggcctggcagaaagccaagcgcaaggccgccgaacaggtccgcgacgtggccgcc
gaactgctcgacatctatgcccgccgcgccgcgcgcaagggctacgcgtttgccgacccg
tccgccgactacgccactttcagcgccggcttcccgttcgaggaaaccccggaccagcag
gccgccatcgaggccgtgcgcgccgacatgctggcacccaagccaatggaccgcctggtc
tgcggcgacgtgggcttcggcaagaccgaagtggccatgcgcgcggcgttcatcgccgtg
cacagtggccgccaggtggccgtactggtgcccaccaccctgcttgcccagcagcattac
aacagcttccgcgaccgctttgccgactggcccgtgaccgtggaagtgatgagccgcttc
aaatcggccaaagaagtggccgccgccgccgcggaccttgccgaaggcaagatcgacatt
ctcatcggcacccacaagctgctgcaggacgacgtacgcttcaaagacctgggcctggcc
atcatcgatgaagagcaccgctttggcgtgcgccagaaagaacagctgaaggcgctgcgc
agcgaggtcgatatcctcaccctgaccgccacgccgattccgcgcacgctgaacatggcg
gtggcgggcatgcgcgacctgtcgatcatcgccacgccgccagcacgccgcctgtcggtg
cgcaccttcgtcatggaacagaacaagagcacggtcaaggaggcgctgctgcgcgaactg
ttgcgcggtggccaggtgtattacctgcacaacgatgtgaaaaccatcgaaaaatgcgcc
gccgaccttgccgagctggtgcccgaggcacgcatcggcatcggccacgggcaaatgcgc
gaacgcgagctggaacaggtgatgagcgatttctaccacaagcgtttcaacgtgctggtg
gcctcgaccattatcgaaaccggtatcgacgtgcccagcgccaacacgatcgtcatcgag
cgcgccgacaagttcggcctggcccagctgcaccagctgcgtggccgggttggccgtagt
caccaccaggcctacgcctacctgctcacacctacccgtcagaaggtgagcgccgacgcc
gaaaagcgcctggaggcgatcgccaacacgcaagaccttggcgcaggctttgtgctggcc
accaacgacctggaaatccgcggtgccggcgagctgctgggcgaaggccagagtgggcag
atccaggcagtgggcttcaccctgtacatggaaatgctcgaacgtgcggtcaaggcaatc
cgaaaaggtacccagccgaaccttgagcaacccctgggtggcggcccggagatcaacctg
cgcctgccggcactgatccccgaggactacctgcctgacgtgcatgcgcgcctgatcctg
tacaaacgcattgcctcggctgccgacgaagaaggcctcaaggacttgcaggtcgagatg
atcgaccgcttcggcttgctgccagagccgaccaagaacctgatgcgcctgacgtcactc
aagctgcacgcggaaaagctcggcatcaagaaagtcgatgcggggcccaacggtggcaag
ctcgagttcgaagccgaaacaccggtcgacccactgaccctgatcaagctgatccagggt
caacccaaacgctacaagttcgaaggcgccacccagttccgcttcctggtaccgatggaa
cgccccgacgaacgtttcaataccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
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