Phaeobacter piscinae: PhaeoP14_00899
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Entry
PhaeoP14_00899 CDS
T05105
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PhaeoP14_00899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppic03019
]
PhaeoP14_00899
03009 Ribosome biogenesis [BR:
ppic03009
]
PhaeoP14_00899
Enzymes [BR:
ppic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PhaeoP14_00899
Messenger RNA biogenesis [BR:
ppic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PhaeoP14_00899
Ribosome biogenesis [BR:
ppic03009
]
Prokaryotic type
rRNA helicases
PhaeoP14_00899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATG39013
LinkDB
All DBs
Position
966558..968714
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AA seq
718 aa
AA seq
DB search
MPSGGAPRSKRNEILKTALEQALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTV
GFGLAMAPTLLGDAEKLDRADLPLALVIAPTRELALQVKRELGWLYAEAGAQVVSTVGGM
DMRDERRALERGAHIVVATPGRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFI
LGESPEERRTLMFSATVPAGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVE
NAVINVLRFHESPNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRD
GRARVCVATDVAARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKA
KGKALRLLRSAKITAETSPAPSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFS
PEQLAAAYLRLFHDRHSAPEELSDPQHDKRERQERAPFGPSVWFAVSGGRKAGAEPRRLL
PALCNAGGLTKDDIGAIRVQFDQSYVEVREGSAESFWGAVKHDGLEEGANVTRLDKAPDL
PKSPRPQGREGGGFRDDKRGHRGQDRGDRGGERGERKPYGDKPRYDKPRGDKPAYGDKPR
GEKPYGDKPRASKPYGDKPRGDKPAYGDKPRFDKPKRTGEGGKATVTARGSSDRVATPSA
PAKPAVPGKPKGDWSNPGKSGRKGPPPPKGKPNSKKNKARAAVSGKPGGNARPQRKGS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgccctctggcggcgcgccccgcagcaagcgaaatgaaatcttgaaaacagcactcgaa
caagcgcttcaggcgcgcggctacgagcatttgacacccgtgcaagaggccgtcaccgca
gccgagctggatcagtccgaccttctggtgtcggcacagaccggatccggcaaaaccgta
ggctttggcctggcgatggcccccacattgttgggcgacgccgagaaactggaccgtgcc
gatctgccgttggcgctggtcattgcgccgacccgcgaattggcgttgcaggtcaaacgc
gaacttggctggctttatgccgaagcgggcgcgcaagtggtctccaccgttggcggtatg
gatatgcgcgatgagcggcgcgcgctggaacgtggcgcccatattgttgtggcaacgccc
gggcgtctgcgcgaccacattatgcgcggctccatcaatctgtcgcaggtccgcgccgta
gtgctggacgaagccgatgagatgctcgatctgggcttccgcgaagaccttgagttcatt
ctgggcgaatccccggaagagcgccggaccctgatgttctcggccaccgtgcctgcgggc
attgcgcggctggcggagacctatctgaaggatcaccagcgcatcaaaaccgtggcggaa
gcctcgcagcatgctgacattgaatatcagatgctggccgtggcgcagcgggatgttgag
aacgcagttattaacgtgctgcgcttccacgagtcgcctaatgcgattgtgttctgcaac
acccgcgcggtggtgaatcggatgaccacacggctgagcaatcgcggattttccgtggtt
gccctgtccggcgagctgtcccaggcggagcggtccaacgcgctgcagtccctgcgggac
gggcgcgcgcgggtctgcgtggcaacggatgtggcggcgcgcgggatcgacctgccgaag
ctggatctggtcattcacgcggatctgccatccagccatgagacgctgttgcaccggtcg
ggccgtactggccgtgccgggcgtcagggcgtgtccgcgctgatcgtgccaccaaaggca
aagggcaaggccctgcgcctgttgcggtcggccaagatcacggcagagaccagcccggcc
cccagtgccgatgatgtccgcacccgcgactttgagcgccttctgggcgacaaggcctgg
agcgaaccggtcagcgaaaatgagaccgcccctgtggcagagctggttgagcggttctcg
cccgagcagctggccgccgcctatctgcgtctgttccacgatcgccacagcgcgcctgag
gagctgagcgatccgcagcacgacaaacgtgagcgccaagaacgcgcgccctttggtccg
tccgtgtggtttgccgtcagcggtggccgcaaggccggtgccgagccgcgccgactgctg
cctgcgctgtgcaatgccggtgggctgaccaaggatgatatcggcgcgatccgggttcag
tttgaccaaagctatgtggaagtgcgcgaaggcagcgccgaaagcttctggggtgcggtg
aaacatgacggtctggaagagggggcaaatgtcacccgtctggacaaggcgccggatctg
cccaaatctccacgtccgcaggggcgtgaaggcggtggtttccgcgatgacaagcgcggc
catcgtggacaggatcgtggagatcgcggcggcgagcggggggagcgtaagccctatggc
gacaagccccgctatgacaagccgcgcggcgacaagcctgcttacggtgataagccacgt
ggtgaaaaaccatatggtgacaagcctcgtgccagcaaaccctatggcgataaaccgcgt
ggtgacaaaccggcctatggcgacaaaccccgtttcgataagcccaagcgcacaggtgag
ggcggcaaagccacggtgaccgcacgcgggtcgtcggaccgggtggcaacgccgtcggcg
cctgccaaacctgcggttccgggcaagcccaaaggcgattggtccaatccggggaaatcc
ggtcgcaaggggccgccaccgccgaagggcaagcccaacagcaagaagaacaaggcgcgt
gcagccgtttccggaaagcccggcggcaacgcgcgaccgcagcgcaagggcagctga
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