Phaeobacter piscinae: PhaeoP14_01058
Help
Entry
PhaeoP14_01058 CDS
T05105
Symbol
rhlE2
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PhaeoP14_01058 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppic03019
]
PhaeoP14_01058 (rhlE2)
Enzymes [BR:
ppic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PhaeoP14_01058 (rhlE2)
Messenger RNA biogenesis [BR:
ppic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PhaeoP14_01058 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
HEM4
Helicase_RecD
SUa-2TM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATG39171
LinkDB
All DBs
Position
complement(1134242..1135627)
Genome browser
AA seq
461 aa
AA seq
DB search
MRMGGTGRGIRPAVKGRDVTEFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGKDV
LGLAQTGTGKTAAFGVPLIAQMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGT
PIKTGLVVGGVSINPQISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQML
DLGFIHALRKIAALLPEQRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQ
SVHFIAKAEKLSLLKELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQG
QRERALASFKSGEVKILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKD
GQAVAFCAPDEMGELKAIQKTMNLNIPVASGRPWEVLPDAKAPAGRRGGGGKPGGGGKPG
SHRRRRSGGGGGGQGGARSGGQGAGQGGGQGKPGGQRRRAQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgggcggcaccggccgtggcatccgcccggctgtgaaaggacgagacgtgaca
gaattttcaaccatggggctgcccgaaaagctcctgacccgcattgctgagctgggctat
accgatccgaccccgattcaggcgcgcgccatcccgcatgcgctgaacggcaaggatgtg
ctgggtctggcgcagaccggcaccggcaaaaccgccgctttcggcgtgcccctgatcgct
cagatgatgcaatacggccgcaagcctgccgccaagaccgtgcgcggtctggtgctggcg
ccgacccgcgagctggccaaccagatcgccgccaacctcaagggcctgaccgaaggcacc
ccgatcaaaaccgggctggttgtcggtggtgtgtcgatcaacccgcagatcagccgcctg
tcgcgcggcaccgacatcctgattgccacgccgggccgtcttctggacatccttgatcgt
ggcgcactggaccttggctcctgcgacttcctcgtgctggacgaggcggatcagatgctg
gacctcggcttcatccacgcgctgcgcaaaatcgcagcactgctgcccgaacagcgccag
accatgctgttctcggccaccatgcccaagcagatgaacgagatcgccaactcctacctg
caaagcccggtccggatcgaggtgaaccctcccggcaaggccgcagacaaaatcacccag
tcggtgcacttcatcgccaaggctgaaaagctgtcgctcctgaaggagctgctgggcgcc
cataaggatgagcgtacactggtctttggccgcaccaaacacggtatggaaaaactgatg
aagacgctgtccgcagcaggcttctcagcggcggcaatccacggcaacaaatcccagggt
cagcgcgaacgcgcgcttgcctcgttcaaatccggagaggtgaagatcctcgtggcgacc
gatgtggccgcccgcggtctggacatccccgacgtgaaatacgtctacaactacgagctg
cccaacgtccccgacgcctatgtgcaccgcattggccggaccgcacgcgctggcaaggac
ggtcaggccgtggccttctgcgcgcccgatgagatgggcgagctgaaagccattcagaag
accatgaacctcaatatcccggtggcctccggccgtccgtgggaggtgctgcccgatgcc
aaggctccggccggacgtcgtggcggtggtggcaaacccggtggcggcggcaaacccggc
agtcatcgtcggcggcgcagtggcggcggtggcggcggccagggcggcgcgcgcagcggt
ggtcagggtgcaggccaaggtggcggacagggcaaacccggcggtcagcgccgccgcgcc
cagtaa
DBGET
integrated database retrieval system
