Pseudomonas piscis: QL104_15190
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Entry
QL104_15190 CDS
T09652
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QL104_15190 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_15190 (ligD)
Enzymes [BR:
ppii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QL104_15190 (ligD)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QL104_15190 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WMN20685
LinkDB
All DBs
Position
3256814..3259294
Genome browser
AA seq
826 aa
AA seq
DB search
MARPLTEYRNKRDFQSTPEPAGRRPRARPAQALQFCVQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPGVRRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGSWFPEGDPHEG
YARGKLRFRLQGEKLGGWWNLFRTRLAGKKEQWLLVKSADDQARTEAEYDILQAQPHSVL
SERTLAPRQASASTSRPRSGSRARSTANQELPDSLKPQLATLVDTPPAGDWLYEIKFDGY
RMLARIEGAQVQLLTRSGLDWTARMPNQARALAELGLESAWLDGEMVVLDADGVADFQAL
QNAFDAGADQSIRYYLFDAPFLNGVDLRQRPLHERRAALKAVLANNRAAALRYSETFDQP
VQQLLAGACQMHLEGLIGKRPDSPYVSRRSGDWIKLKCQQRQEFVILGYTDPKGSRSALG
ALLLGLHDPDRGGLRYAGKVGTGFSSASLQHLLQRLRPLETSRPVLDEPPAGVPAATVHW
VQPRLLAQVSYSQMTRDGVVRHGVFHGLRDDKPATGVVLERAAPAKTTEPAVDGLRITHG
DRLVDAASGATKLQVADYYARVAQWILPHLQQRPVALVRAPQGLAGELFFQKHAAQLAIP
GLRTFTKAQAGQAAMVIEDLPALLGAVQMNMLELHTWNATSKDFDRPDRLVLDLDPDPTL
PWKTMVEACQLTLTLLDELGLRAFIKTSGGKGLHLVVPLVRRAGWDEVKAFSQAMVQHLA
GLFPERLSAVSGPRNRVGRIFIDYLRNGRGATTVCAYSLRAREGLPVSVPVHREELQQLR
GAGQWTLADLARRLDEAEDPWAGYTATRQSITAAMRRKLGIGEPAT
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggctagaccgctaacggaataccgcaacaaacgtgacttccagtccacccccgaacct
gcgggccggcggccgcgtgccaggccggcgcaggccctgcagttctgcgtgcagaaacac
gacgcgagccacctgcactacgactttcgcctggaactggatggcaccctgaaaagctgg
gccattcccaagggaccttcgctggaccccggggtgcgccgcctggccgtgcatgtcgag
gaccatcccctggactacgccagcttcgaagggcatatccccgaaggccactatggcgcg
ggcgacgtgattgtctgggaccgcggcagctggtttcccgagggcgacccccacgagggt
tatgcccggggcaagctgcgctttcgcttgcagggcgagaagctcggaggctggtggaat
ctgtttcgtacccgcctggcaggcaagaaggaacaatggttgttggtcaagtccgccgat
gaccaggcccgcaccgaagcggagtacgacattctccaggcgcagccgcacagcgtgctc
agcgagcgcaccctggcgccgcgccaggcatcggcgtccacttcccggcccaggtctggg
agcagggcacgctccactgcgaatcaggaattgccggactcgctcaagccgcaattggcc
actttggtggacacgccgccagcgggcgactggctctatgaaatcaagttcgacggctac
cgcatgctggctcgcatcgaaggagcgcaagtacaactgctgacccgcagcggcctggat
tggacggccaggatgcccaaccaggcccgggccctggccgagctgggattggagtcggcc
tggctggacggcgagatggtggtattggacgccgacggtgtggccgacttccaggccttg
cagaacgccttcgatgccggggccgaccaatccatccgctactatttgttcgatgcgccc
tttctcaatggcgtggacctgcgccagcgaccgctgcacgagcgccgcgctgcgctcaag
gccgtgctggccaacaaccgcgcggcggcgctgcgctattccgagactttcgaccagcct
gtgcagcagctgttggctggcgcctgccagatgcacctggagggcctgatcggcaagcgc
cccgacagcccttatgtcagtcggcgcagcggcgactggatcaagctcaagtgccagcaa
cgccaggaattcgtgatcctcggctacaccgatcccaagggcagccgcagcgccctgggc
gcgctgttgctggggctgcacgacccggaccggggcggcttgcgttacgccggcaaggtc
ggcaccggcttcagcagcgcttccctccagcacttgctccagcggttgcgaccgttggag
acatcccggccggtgctggatgaaccgcctgcgggggtgcctgcggccacggtgcactgg
gtgcagccgcgcttgctggcgcaagtctcctacagccagatgacccgtgacggtgtggta
cgccacggggtcttccatggcctgcgcgatgacaagccggccactggcgtggtcctggag
cgagcggcaccggccaaaacgaccgagccagcggtagatggcctgcgtatcactcatggc
gaccgcctggtcgatgccgcaagcggtgccaccaaactgcaggtggctgactactatgcc
cgggtggcgcagtggatcctgccccacctgcagcagcgcccggtggcgctggtgcgtgct
ccccaaggcctggcgggagagctgttcttccagaagcacgccgcgcaactggcgattccc
ggcttgcggacctttaccaaggcccaggcgggccaggcggccatggtcatcgaggacctg
ccggcgctgctgggcgcggtgcagatgaacatgctggaactgcatacctggaacgccacc
agcaaggacttcgaccgccccgaccgcctggtgctcgacctcgatccagacccgactttg
ccctggaagaccatggtcgaggcctgccagctgacactgacgctgcttgacgaactgggc
ttgcgagcctttatcaagaccagcggtggcaagggcctgcacctggtggtgccgttggtg
cggcgggccggttgggacgaggtcaaggccttcagccaggcaatggtccagcacttggcg
gggttgtttccggagcgcttgtcggcggtgtccgggccgcgcaaccgggtgggcaggatt
ttcatcgattacctgcgcaatggccggggagcgaccacggtctgtgcctattccctgcgg
gcccgggaaggcctgccggtctcggtgccggtgcaccgcgaagaattgcagcagctgcgt
ggagcggggcagtggaccctggccgacctggcgcgacgcctggacgaagccgaagatccc
tgggccggctataccgccacccgccagtcgatcaccgcggcgatgcgtcgcaagctgggg
ataggcgagcctgcgacgtga
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