Pseudomonas plecoglossicida: RK21_01966 Help Entry RK21_01966        CDS       T03646                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism ppj  Pseudomonas plecoglossicida Pathway ppj03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:ppj00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     RK21_01966  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ppj03400]     RK21_01966 Enzymes [BR:ppj01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      RK21_01966 DNA repair and recombination proteins [BR:ppj03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      RK21_01966 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  AJG13474 UniProt:  A0A099N1D9 LinkDB All DBs Position complement(2111777..2114269) Genome browser AA seq 830 aa AA seqDB search MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDSQARSEADYSIVDAQPDSVL SDRTLVPRKPTAKKAAAPRRKAASKGRKVPLPAQLQPQLATLVDSPPSGDWRYEVKFDGY RILARIDGDDVRLFTRNGHDWSGKMPRQVAALRALGLDSAWLDGEVVVAGENGAADFQAL QNAFDTEHDEHITYYLFDLPFLGSQDLRQLPLQDRRDTLQRLLEHNESDVLKYSADFDQP VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG ALLLALHDNDSGELRYAGKVGTGFSTTTLASIHARLKPLETAKPALPKPPTGAEARGVHW LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPKRKQAKAPEAL GELRLTHPERVVDATSGVTKREVAEYYAAVSQWILPQLKNRPVALVRAPDGLAGELFFQK NAGQLHLPNVLSYDKAEAGQAAMVINRADTLIGAVQMNMLELHTWNATDKDFDKPDRFVL DLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRASWDEVKAFS HGIVDYLARLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTACAYTLRAREGLPVSVPIW REELPQLKGANQWNIGNVLERLGDVDDPWADYGKTRQSITVGMRKQLGLA NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt atggccaagcccctgcaggaatatgcgcgcaagcgcgacttcaatgccacgcccgagccc agcggcaagcgcagccgtggcaagcgggcccacgcgctgcagttctgcatccagaagcac gatgccagccacctgcactacgacttccgcctggaactcgatggcacgctgaaaagctgg gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag gaccacccgctggactacgccgacttcgaaggccatatccccgaagggcattacggcgcg ggcgacgtgatcgtctgggaccggggcatctgggagcccgaaggtgatgcgcatgaggcc tatgccaagggcaaactgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac ctgttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcgcacgac agccaggcgcgcagcgaagccgactacagcatcgtcgacgcccagcccgacagcgtgctc agcgaccgcacgctggtgccgcgcaagccgacagcaaaaaaggccgccgcgccacgtcgc aaagccgccagcaaaggccggaaggtgccgttgccggcgcagctgcagccacaactggcg accttggtcgactccccgcccagtggcgactggcgctacgaggtcaagttcgacggttac cgcatccttgcccgcatcgacggtgatgacgtgcgcctgttcacccgcaatggccatgac tggagcggcaagatgcccaggcaggttgccgctttgcgcgcgctgggcctcgattcggcc tggctcgatggcgaggtggtggtggctggcgaaaacggcgcggcggacttccaggcgttg cagaacgctttcgacaccgagcatgacgagcacatcacctattacctgttcgacctgccc ttcctgggcagccaggacctgcgccagttaccgctgcaggaccggcgcgacaccttgcag cgcttgctggaacacaacgaatcggacgtactcaagtactccgccgactttgaccagccg gtcgaatccctgctcgacagcgcctgccggctgcaactcgaaggcctgatcggcaagcgc gtcgacagcccctacagcggccgccgcagccccgactggatcaagctcaagtgcaagcag cgccaggagttcgtaatcgtcggctacaccgaccccaaaggcagccgcagcggctttggt gccctgctgctggccttgcacgacaacgacagcggcgagttgcgctatgccggcaaggtc ggcaccggcttcagtacaaccacgctggccagcatccatgcccggctcaaaccattggaa accgccaagccggccctgcccaaaccgcccaccggggccgaagcccggggcgtgcattgg ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg cgccactcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag cgcagcatgcccgccaagaccctgcccaagcgcaagcaagccaaggcccccgaggctttg ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag cgcgaggtcgccgagtactacgccgcagtcagccaatggatattgccccagctcaagaat cgcccggtggcgctggtacgtgcaccagacgggctggccggggagctgttcttccagaag aacgccggccagttgcatctgcccaacgtgctcagctatgacaaggccgaggccggccag gcggcgatggtcatcaatcgcgccgacaccttgatcggcgcagtgcagatgaacatgctc gaactgcacacctggaacgccacggacaaagacttcgacaagcccgaccgcttcgtcctc gaccttgacccggacccggcactgccgtggaaggccatgctggaagccacccaactggcc ctcaccttgctggatgaactgggcctgaaggtgtttctcaagaccagtggcggcaaaggc atgcacctggtagtgcccctgacccggcgtgccagctgggatgaagtcaaggcattcagc cacggcatcgtcgattacctggccaggttgttccccgacaggctcagtgccgtgtccggg cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaacggcaagggggctacc accgcctgcgcgtataccctgcgcgcccgcgaaggcctgccggtatccgtgccgatctgg cgcgaggaactgccgcaactcaagggcgccaaccagtggaacatcggcaatgtgcttgaa cgactgggcgatgtcgacgacccctgggccgattatggcaagaccaggcaatcgatcacc gtgggcatgcgcaagcagctggggctggcctga

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