Pseudomonas plecoglossicida: RK21_03278
Help
Entry
RK21_03278 CDS
T03646
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppj
Pseudomonas plecoglossicida
Pathway
ppj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RK21_03278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppj03400
]
RK21_03278
Enzymes [BR:
ppj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RK21_03278
DNA repair and recombination proteins [BR:
ppj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RK21_03278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJG14786
UniProt:
A0A0B5KGS3
LinkDB
All DBs
Position
3432175..3435600
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFLPVEDCFARLKQWPRVVVSTEDLDPGVGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWADFITGSERLAITI
APLDEGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
AAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVANAAAELAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGK
IEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggcaatctacccggtgccgccctcagcctg
gccatcgccgaggccgccagcagcgcgggccgcttcactttgctgctgactgccgacagc
caggctgccgatcgtctggaacaggaacttcgcttctttgccccggacctgccggtgctg
ccgttccctgattgggaaaccctgccctacgacctgttctcgccgcaccaggacatcatt
tcccagcgcatcgccagcctctaccgcctgcccgagctgagccacggcatcctcgtggtg
ccggtcaccaccgccctgcaccgcctggcgccgacccgcttcctgctgggcagcagcctg
gtgctggacgtgggccagaccatcgacgtggagcaaatgcgcctgcgcctggaggccagt
ggctatcgctgcgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgttg
atcgacctgttcccgatgggcagcaagctgccctaccgtatcgacctgttcgatgacgag
atcgagacgctgcgcaccttcgaccccgagacccagcgctcgatcgacaaggtggactcg
gtgcgcttgctgccggcgcgcgagtttccgatgcagaaagaggaagtgacccgcttcaag
gcgcgcttccgcgaacgcttcgatgtcgacttccgccgcagcgcgatcttccaggacctg
gccagcggcatcatccccgccggcatcgagtactacctgccgctgttcttcgaagaaacc
tcgaccctgttcgactacctgccagccgacacccaggtgttctcgctgcccggcgtggaa
caggccgccgaacacttctggaacgacgtgcgcgggcgttatgaagaccgccgtggcgac
ctgagccggccgctgctgccgccggccgagctgttcctgccggtggaagactgctttgcc
cggctcaagcaatggccacgggtagtggtcagcaccgaagacctcgacccgggcgtgggt
cgcgagcgcttcccggcacgcgccctgcccaacctggcaatcgaagccaaggccaaccag
cccctggccgaactggccaacttcctcgaccagttccccggccgggtgttgttcaccgcc
gaatcggcgggccgccgcgaagtgctgctggagctgctcgagcggctgaaactgcgcccg
cataccgtcgacggctgggccgacttcatcaccggcagcgaacgcctggcaatcaccatc
gccccactggacgaaggcctgctgctggacgacccaggcctggccctgatcgccgaaagc
ccgctgttcggccagcgggtcatgcagcgccggcgccgcgacaagcgcggcgaaaccgcc
aacgacgcggtgatcaagaacctgaccgagctgcgcgaaggcgcgccggtggtgcacatc
gaccatggtgtgggccgttacctgggcctggccaccctggaaatcgacggccaggccgcc
gaattcctcaccttggaatacgccgagggcgccaagctgtacgtaccggtggccaacctg
cacctgatcgcccgctacactggcagcgacgatgccctggcaccgctgcaccggctgggc
tcggaggcctggcagaaggccaagcgcaaggccgccgaacaggtgcgcgacgtcgccgcc
gaactgctcgatatctatgcccgccgcgccgcgcgcaaaggctatgcatttgccgacccg
tccgccgactacgccaccttcagcgccggcttcccgttcgaggaaaccccggatcaacag
gctgccatcgaagccgtgcgtgccgacatgctggcgcccaagccgatggaccgcctggtg
tgcggcgacgtcggcttcggcaagaccgaagtcgccatgcgcgcagcgttcatcgccgta
cacagcggccgccaggtggccgtgctggtacccaccaccctgctcgcccagcagcactac
aacagcttccgcgaccgctttgccgactggccggtgaccgtggaggtgatgagccgcttc
aagtcggccaaggaagtggccaacgccgccgccgagctggccgaaggcaagatcgacatc
cttatcggcacccacaagctgctgcaggacgatgtacgcttcaaggaccttggcctggcc
atcatcgacgaagagcaccgctttggcgtgcgccagaaggaacagctcaaggccctgcgc
agcgaagtggacatcctcaccctcaccgccacgccgatcccgcgtaccctgaacatggcg
gtggcgggcatgcgcgacctgtcgatcatcgccacgccaccggcgcgccgcctgtcggta
cgcaccttcgtcatggagcagaacaagagcacggtcaaggaggcgctgctgcgcgagctg
ctgcgcggtggccaggtgtactacctgcacaacgatgtgaaaaccatcgagaaatgcgcc
gccgaccttgccgaactggtgccagaggcgcgcatcggcatcggccacgggcagatgcgc
gagcgcgagctggaacaggtgatgagcgatttctaccacaagcgcttcaacgtgctggtg
gcctcgaccatcatcgaaaccggcatcgacgtgcccagcgccaacacgatcgtcatcgag
cgtgccgacaagttcggcctggcccagctgcaccagttgcgcggccgtgttggccgaagc
caccaccaggcctacgcctacttgctgacgccaacccggcagaaggtcagcgccgacgcc
gaaaaacgcctggaggcgatcgccaacacccaggacctcggtgccggcttcgtgctggcc
accaacgacctggagattcgcggcgccggtgagttgctgggcgaaggccagagcgggcag
atccaggcggtgggctttaccttgtacatggaaatgctcgaacgcgcggtcaaggcgatc
cgcaagggcacccagcccaaccttgagcagccgctgggcggcggaccggaaatcaacctg
cgcctgccggcactgatccccgaggactacctgcccgacgtgcatgcacggctgatcctg
tacaagcgcattgcctcggctgccgatgaagaaggcctcaaggacctgcaggtggaaatg
atcgaccgcttcggcctgctgcccgagccgaccaagaacctgatgcgcctgacctcgctc
aagctgcacgcggaaaagctcggcatcaagaaagtcgacgccggccccaacggcggcaag
atcgagttcgaggccgagaccccggtcgacccgctgaccctgatcaagctgattcagggc
cagcccaaacgctacaagttcgaaggcgccacccagttccgtttcctggtgccgatggaa
cgccccgacgaacgtttcaataccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
DBGET
integrated database retrieval system
