Pandoraea pnomenusa 3kgm: U875_20495
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Entry
U875_20495 CDS
T02936
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppk
Pandoraea pnomenusa 3kgm
Pathway
ppk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U875_20495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppk03400
]
U875_20495
Enzymes [BR:
ppk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U875_20495
DNA repair and recombination proteins [BR:
ppk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U875_20495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHB07434
LinkDB
All DBs
Position
4465698..4468232
Genome browser
AA seq
844 aa
AA seq
DB search
MAAYDARRNFAATPEPRGERAAQGRAMRYVIQRHDASHLHYDFRLELDGTLKSWALPKQP
GPDVSRPRLAVQVEDHPLAYADFSGDIPPGNYGAGHVDIWDSGTWEPHGDARRDYEDGKL
SFTLHGERLDGDWTLVRTTKPARQPQWLLIHRRDGTRHATTLQASTPAATQTRSAAARTE
AKTTTRTRTRKTSRQSSQSPPTTLSPMLATLVDAAPPSAGWHAEIKLDGYRVLIRIDGDD
VRVFTRSGQDWTHRFRPACDALRKCALPNAWLDGEAVVVGAHGLPDFQALQRAFDANAQD
AILIYVFDMPWCNGDDMRDMPLRERQAALAAIFEGGETDAVRVLQPVSGELESLWHSACE
AGLEGIMVKRDDSPYVAGRSDAWRKLKCSQRQEFVVLGFTEPSGTRQGFGALLLGYYDDD
GKTLRYAGKVGTGFDTDALLRLRKRFDAVRSPRAPLSPAPKPAGAARVRWLEPTLVAEVR
FAEWTRDGNVRQASFVAMRDDKPAKDIRREARMRGTVNALAPSRQRGRPDKETSPMPRSA
KSNAEPPSLPVKITHGDRVMDTHSEVTKAELAAYYHAVAPWMLAHLAGRPVAVLRAPEGI
GGEMFFQKHAAKTMPGVHTLDPSLDPDHAALMQIDDVRGLVGAVQMGAVEFHTWNARSDL
IERPDRVIFDLDPGKGLDFAAVVEGARLIRGLLDELGLTAFVKTSGGRGLHIVTPLARRH
EWDVAKAFAEAVARHMARIFPDRFTATMGPKHRVGKCFIDYLRNYRGATTVCAYSSRARE
GMAVSMPVRWEDLTALPGADAWNVRNAVEHVSSLRQDPWEGYDKAAQQRLTKEILTRLTR
ATAR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctacgatgccaggcgaaatttcgcggcgacgccagaaccgcgcggcgagcgc
gccgcgcaaggacgcgcgatgcggtatgtcatccagcgccatgacgccagtcatctgcac
tacgacttccggctcgaactcgacggcacgctgaagtcgtgggcgctgccgaagcagccc
ggccccgacgtcagccgcccgcgactggccgttcaggtggaggatcatccgttggcatac
gcggatttttcgggcgacattccaccgggaaactacggtgccgggcacgtcgacatctgg
gacagcggcacgtgggagccgcacggcgacgcgcggcgcgactatgaggacggcaagctg
tcgttcaccttgcacggcgagcgtctcgacggagactggacgctcgttcgcaccacgaag
ccggcgcgtcaaccgcaatggctgctgatccaccggcgcgatggcacacgccacgccacc
acgcttcaggcgtcgacacccgccgccacgcaaacgcggtccgctgctgcgagaaccgaa
gcaaaaaccacaacccgaacgcgaacgcgcaagacttctcgtcaatcgtcccaaagcccg
ccgacgacactcagcccgatgctcgccaccctcgtcgacgcagcgccgccgtccgctggc
tggcatgccgagatcaagctcgacggttaccgcgtgctgatccgcatcgacggcgacgac
gtgcgcgtattcacgcgctcggggcaggactggacgcatcgttttcgtcccgcgtgcgac
gcgctgcgcaaatgcgccctgcccaacgcgtggctcgatggcgaagccgtggtcgtcggc
gcgcacggtctacccgatttccaggcgttgcaacgcgccttcgatgcgaacgcgcaggac
gccatcctgatctacgtcttcgatatgccgtggtgcaatggcgacgacatgcgcgacatg
ccgttgcgcgaacgacaggccgcgctcgcggcgatattcgaaggtggggaaaccgacgcc
gtgcgcgtgctgcaaccggtgagcggcgaactcgaatcgctgtggcatagcgcgtgcgag
gccggactggaaggcatcatggtcaagcgcgacgattcgccttacgtcgcgggacgcagc
gatgcgtggcgcaagctcaagtgctcgcagcgtcaggagttcgtcgtgctcggtttcacc
gaaccgtccggcacgcggcaaggattcggtgcgttgttgctggggtattacgatgacgac
ggcaagacgctgcgctacgcgggcaaggtcggcacgggcttcgacaccgatgccttgctg
cgcctgcgcaagcgattcgatgccgtgcgatcgccgcgcgcgccgttgtcgcccgcgccg
aagcctgccggcgccgcacgcgtgcgctggctcgaacccacgctcgtggccgaggtgcgc
ttcgccgagtggacccgcgacggcaacgtgcgccaggcgtcgttcgtggcgatgcgcgac
gacaagcccgcgaaggacattcgccgcgaggcgcgcatgcgtggaaccgtcaacgcgctc
gcgccatcccgccaacgtggtcgccccgacaaggagacatcgccaatgccgcgcagtgcg
aaatcgaacgcagaacccccttcgttgcccgtgaagatcacccacggcgatcgggtgatg
gatacccactccgaggtcaccaaggcggaacttgccgcgtactaccacgccgtggccccc
tggatgcttgcgcatctggccgggcgcccggtggcggtactgcgtgcgccggagggtatc
ggcggcgagatgttcttccagaagcacgcagcaaagacgatgcccggcgtgcacacgctc
gatccctcgctcgatcccgatcatgcggcgctcatgcagatcgacgacgtgcggggcctt
gtcggcgcggtgcagatgggcgccgtcgagtttcacacatggaatgcacgcagcgatctg
atcgagcgtcccgatcgcgtcatcttcgacctggaccccggcaaaggcctggatttcgcg
gccgtcgtcgaaggcgcacggctgattcgcggattgctcgacgagttgggcctgaccgcc
ttcgtgaaaaccagcgggggacgcggtcttcacatcgtgacaccgctggcacgccgtcat
gagtgggacgtcgccaaggccttcgcagaggcagtggcccggcacatggcgcgcatattt
ccggatcgcttcacggcaacgatggggccgaagcatcgcgtggggaaatgcttcatcgac
tatctgcgcaattaccgcggcgcgacgaccgtgtgcgcctattcgtcgcgggcgcgcgaa
ggcatggcggtatcgatgccggttcgctgggaggatctgaccgcattgcccggcgccgat
gcatggaatgtgcgcaacgccgtggaacacgtctcctccctgaggcaagacccctgggag
ggctatgacaaggccgcgcagcagcggttgaccaaggaaatattgacccggctgacgcgg
gcgacggcgcgctag
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