Pleuronectes platessa (European plaice): 128454064
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Entry
128454064 CDS
T09923
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03013
Nucleocytoplasmic transport
pplt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128454064
03015 mRNA surveillance pathway
128454064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pplt03019
]
128454064
Enzymes [BR:
pplt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128454064
5.6.2.5 RNA 5'-3' helicase
128454064
Messenger RNA biogenesis [BR:
pplt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128454064
mRNA cycle factors
Common to processing body (P body) and stress granule
128454064
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
128454064
NCBI-ProteinID:
XP_053293200
EnsemblRapid:
ENSOESG00000012383
LinkDB
All DBs
Position
13:complement(14838053..14851284)
Genome browser
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGILQNGDDPVLKAGQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLAGQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSTNGRMSNMYFQTHDQIGMIGTGSNTMTSMNI
PIPFNLVMPPIPPSGYMGQANGPTGGRGGGMKGRAGSGGGGGGGTRGGRQRNRGNMGNHS
GGNGGADRGHGGHMSSSQVSQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctgacgttcctggacacggaggaa
gcggagttgctgggagcggacacccaaggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccagacccagagtcagctcgacggacaggttaatggt
cctgatgggatcctgcagaatggagacgaccctgtgttgaaagccggtcagctgctggca
gagctgaactttgaggaagatgaggaggatacctactacaccaaggaccttcctgttcat
gcctgcagttactgtgggattcatgatccagcctgtgtggtttactgcaacaccagcaag
aagtggttctgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggacctctaggggaaacggtactg
gagtgttacaactgtggctgtcgcaatgtcttcctgctgggcttcatccccgccaaggct
gattcagtagttgtgttgctgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctcgtcaaaatcccgtcagagcaggagcagctcagggcccgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccacggcgaccctggaggacctggag
aagccaggtgtggatgaggagccgcagcacgtcctgctccgctatgaggacgcttatcag
taccagaacatctttgggcctctagtgaagctggaggctgactatgacaagaaactcaaa
gagtcacagactcaagacaacattacagtcagatgggacttgggactgaataaaaagaga
attgcatatttcactcttccgaagacagactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaagggagatctggctcctccatggaaaggcattggacacgtcatc
aaagtccctgataactatggtgatgagatcgccattgagttaagaagcagtgccggggct
cctgtggagatcccacacaacttccaggtcgactttgtgtggaagtcaacttcctttgac
aggatgcagagtgcactgaagacgtttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacacgaggtagaagatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgctcaaggcctgcctgatctcaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgccccctcagtctgatccagggacctcccggcacagggaagacagtaacc
tctgccaccgttgtctaccacctggctggacagggtaatgggccagtgctagtatgtgct
ccaagtaacattgctgttgaccagctgacagagaagatccaccagacaggactcaaggtg
gtgaggctgtgtgccaagagcagagaagccattgactcgcctgtctccttcctggctttg
cacaaccagacccgcaacatggacagtatgccagagcttcagaagctgcaacagctgaag
gatgaaactggtgagctgtcatcctcagatgagaagcgctaccgagctctgagacgtacc
gctgagagggagctgcttatgaatgctgatgtgatttgttgtacctgcgttggggcgggg
gatcctcgtctggctaagatgcagttccgctcgatcctgatcgatgagagcacccaggcc
actgaaccagagtgcatggtgcctgtcgtcctgggggccaagcagttgattttggtgggg
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagcaaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccgaccaattcgtctgcaggtccag
tatcgcatgcacccggccctcagtgccttcccctctaacatcttctatgaaggctctctg
cagaacggagtcactgctgcggaccgtgtgaagaaaggctttgactttcagtggccgcag
cctgacaagccgatgttcttttacgtcacacaaggccaagaggagattgccagctccgga
acatcatatctgaacaggacagaggcagccaacgtggagaaaataaccacgaggttgctg
aaggctggagcaaaacctgatcagattggcatcattactccgtatgagggccagaggtcc
tacctggtccaatacatgcagttcagtggctccctccataccaagctctatcaggaggtg
gagatagccagtgtggacgcgtttcaaggcagagagaaagacttcatcatcctgtcctgt
gtgagagccaatgagcaccaaggcattggcttccttaatgatcccagacgtctaaatgtg
gcactcaccagagccaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaag
cagcccctgtggaaccacctgctgaactactacaaggagcagaaggtcctggttgaaggc
cccctcaacaacctgagggagagcctcatgcagttcagcaagccacggaagctggtcaac
accatcaaccctgggggtagatttatgagcacagccatgtatgatgccagggaggcactc
attcctggatctgtttatgaccgcagcaccaatggacgcatgtccaacatgtattttcag
acccatgaccagatcggtatgattggcacaggatccaataccatgacatcaatgaatatc
cctatccccttcaacctggtgatgccccctataccgccctctggatacatggggcaggcc
aatgggcccacaggaggtcgtggtggaggtatgaaggggagggcagggagcggaggtgga
ggcggaggcgggactcgaggtggccgtcaacgaaaccgtggcaacatgggaaaccacagt
ggagggaatggaggagcggaccgtgggcatggaggacatatgagcagcagccaggtcagt
caggacctgggctcccagtccttctctcagggtcctctgacgcagggctacatcaacatg
agccagccgtcacagatgagtcagcccgggctctcacagcctgaactctcccaggacagc
tacctaggagacgagttcaagtcccagattgatgtggctctgtcccaggactccacctac
cagggggagcgggcctaccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
